diff --git a/bugsigdb_signatures_genus_metaphlan.gmt b/bugsigdb_signatures_genus_metaphlan.gmt index e05a5b578..9ffb305f1 100644 --- a/bugsigdb_signatures_genus_metaphlan.gmt +++ b/bugsigdb_signatures_genus_metaphlan.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus @@ -5398,11 +5398,9 @@ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA k bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnobacterium k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Crocinitomicaceae|g__Wandonia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ethanoligenens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Anaerovoracaceae|g__Mogibacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Oribacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Rikenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA k__Bacteria|k__Pseudomonadati|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides @@ -5422,13 +5420,11 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA k__Bacteria|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila diff --git a/bugsigdb_signatures_genus_metaphlan_exact.gmt b/bugsigdb_signatures_genus_metaphlan_exact.gmt index 414f1f212..70568c291 100644 --- a/bugsigdb_signatures_genus_metaphlan_exact.gmt +++ b/bugsigdb_signatures_genus_metaphlan_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes @@ -4595,9 +4595,9 @@ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA k bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnobacterium k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Crocinitomicaceae|g__Wandonia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ethanoligenens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Anaerovoracaceae|g__Mogibacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Oribacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Rikenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA k__Bacteria|k__Pseudomonadati|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides diff --git a/bugsigdb_signatures_genus_ncbi.gmt b/bugsigdb_signatures_genus_ncbi.gmt index addf10729..aec092a0c 100644 --- a/bugsigdb_signatures_genus_ncbi.gmt +++ b/bugsigdb_signatures_genus_ncbi.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 2759736 1386 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 2759736 @@ -5398,11 +5398,9 @@ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA 1 bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA 140625 1115103 1263 33042 bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA 177971 189330 253238 86331 265975 841 28138 283168 bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 133925 195950 -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 838 -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 838 -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1654 59735 838 2974251 195950 157 -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 2701 2895509 838 -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 194 2895509 838 +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1654 59735 195950 157 +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 2701 2895509 +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA 194 2895509 bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 1485 bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA 1350 bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 816 @@ -5422,13 +5420,11 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA 838 2974251 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA 816 375288 239759 bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA 572511 838 157 -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 838 2974251 -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 2527773 838 909656 239759 816 375288 283168 +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 2527773 bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA 239759 bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA 239759 816 283168 375288 909656 1926672 bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA 239759 35832 283168 838 bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA 2974251 375288 283168 816 909656 239759 577309 397864 35832 -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 838 1926672 2974251 157 bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA 239934 239759 816 397864 35832 29521 2527773 283168 375288 577309 909656 838 2974251 157 2974265 bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA 239759 816 397864 35832 29521 2527773 2974265 283168 375288 577309 909656 838 1926672 2974251 157 bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA 909656 375288 816 239759 283168 35832 diff --git a/bugsigdb_signatures_genus_ncbi_exact.gmt b/bugsigdb_signatures_genus_ncbi_exact.gmt index d9dd8a019..97a1c94d8 100644 --- a/bugsigdb_signatures_genus_ncbi_exact.gmt +++ b/bugsigdb_signatures_genus_ncbi_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 1654 1716 1301 162289 189330 33024 40544 1386 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 @@ -4597,7 +4597,7 @@ bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA 1 bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 133925 195950 bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1654 59735 195950 157 bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 2701 -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 194 +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA 194 bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 1485 bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA 1350 bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 816 diff --git a/bugsigdb_signatures_genus_taxname.gmt b/bugsigdb_signatures_genus_taxname.gmt index eddb85c1c..85cf281a6 100644 --- a/bugsigdb_signatures_genus_taxname.gmt +++ b/bugsigdb_signatures_genus_taxname.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Lacticaseibacillus Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus @@ -5398,11 +5398,9 @@ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA S bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA Lachnobacterium Wandonia Ruminococcus Coprococcus bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA Shuttleworthella Dorea Ethanoligenens Mogibacterium Oribacterium Roseburia Rikenella Odoribacter bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Olsenella Tannerella -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Prevotella -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Prevotella -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Actinomyces Bergeyella Prevotella Segatella Tannerella Treponema -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gardnerella Metamycoplasma Prevotella -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Campylobacter Metamycoplasma Prevotella +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Actinomyces Bergeyella Tannerella Treponema +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gardnerella Metamycoplasma +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA Campylobacter Metamycoplasma bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Clostridium bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA Enterococcus bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Bacteroides @@ -5422,13 +5420,11 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA Prevotella Segatella bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA Bacteroides Parabacteroides Alistipes bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA Blautia Prevotella Treponema -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella Segatella -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Candidatus Cibiobacter Prevotella Phocaeicola Alistipes Bacteroides Parabacteroides Odoribacter +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Candidatus Cibiobacter bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA Alistipes bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA Alistipes Bacteroides Odoribacter Parabacteroides Phocaeicola Prevotellamassilia bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA Alistipes Bilophila Odoribacter Prevotella bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA Segatella Parabacteroides Odoribacter Bacteroides Phocaeicola Alistipes Paraprevotella Barnesiella Bilophila -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Prevotella Prevotellamassilia Segatella Treponema bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA Akkermansia Alistipes Bacteroides Barnesiella Bilophila Brachyspira Candidatus Cibiobacter Odoribacter Parabacteroides Paraprevotella Phocaeicola Prevotella Segatella Treponema Leyella bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA Alistipes Bacteroides Barnesiella Bilophila Brachyspira Candidatus Cibiobacter Leyella Odoribacter Parabacteroides Paraprevotella Phocaeicola Prevotella Prevotellamassilia Segatella Treponema bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA Phocaeicola Parabacteroides Bacteroides Alistipes Odoribacter Bilophila diff --git a/bugsigdb_signatures_genus_taxname_exact.gmt b/bugsigdb_signatures_genus_taxname_exact.gmt index cab1a6116..2b0243d46 100644 --- a/bugsigdb_signatures_genus_taxname_exact.gmt +++ b/bugsigdb_signatures_genus_taxname_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Bacillus bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes @@ -4597,7 +4597,7 @@ bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA S bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Olsenella Tannerella bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Actinomyces Bergeyella Tannerella Treponema bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gardnerella -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Campylobacter +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA Campylobacter bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Clostridium bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA Enterococcus bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Bacteroides diff --git a/bugsigdb_signatures_mixed_metaphlan.gmt b/bugsigdb_signatures_mixed_metaphlan.gmt index 4c34e2e77..a5b36f281 100644 --- a/bugsigdb_signatures_mixed_metaphlan.gmt +++ b/bugsigdb_signatures_mixed_metaphlan.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Alcaligenaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae k__Bacteria|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus k__Bacteria|p__Cyanobacteriota bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Anaerostipes k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae @@ -6166,14 +6166,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA k__ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Christensenellales|f__Christensenellaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnobacterium k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Crocinitomicaceae|g__Wandonia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus callidus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus garvieae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ethanoligenens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|s__Enterococcaceae bacterium RF39 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Anaerovoracaceae|g__Mogibacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Oribacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Christensenellales|f__Christensenellaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Rikenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma solani k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis +bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA k__Bacteria|k__Pseudomonadati|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Bacillati|p__Bacillota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Turicibacteraceae|g__Turicibacter|s__Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus canintestini k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia fergusonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus vaginalis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides goldsteinii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Parasutterella|s__Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile @@ -6207,15 +6208,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|s__Bacilli bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|s__Bacteroidaceae bacterium k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|s__Clostridia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|s__Erysipelotrichaceae bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|s__Oscillospiraceae bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnospira|s__Lachnospira eligens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|s__Clostridiaceae bacterium OM08-6BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium OM04-12BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea longicatena k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. OM07-10AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|s__Desulfovibrionaceae bacterium k__Bacteria|p__Elusimicrobiota|c__Elusimicrobia|o__Elusimicrobiales|s__Elusimicrobiales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Faecalibacillus|s__Faecalibacillus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bicirculans (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bromii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium pseudocatenulatum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera sp. BL7 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium adolescentis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus faecium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera elsdenii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia coli k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA k__Bacteria|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides eggerthii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides fragilis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Durand et al. 2017) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF27-2AA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella aerofaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus eutactus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea formicigenerans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium succinatutens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola plebeius k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia inulinivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella lascolaii k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Duodenibacillus|s__Duodenibacillus massiliensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Eshraghiella|s__Eshraghiella crossota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella stercorea k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella atypica k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium diff --git a/bugsigdb_signatures_mixed_ncbi.gmt b/bugsigdb_signatures_mixed_ncbi.gmt index 98d3e8924..469255ac7 100644 --- a/bugsigdb_signatures_mixed_ncbi.gmt +++ b/bugsigdb_signatures_mixed_ncbi.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 91061 1236 1654 1716 1301 162289 189330 33024 40544 2037 2049 506 186826 1300 31977 91347 1653 57037 1386 186817 bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA 100883 1117 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 207244 57037 @@ -6166,14 +6166,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA 140 bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA 177971 186803 171550 116085 838 990719 371674 33038 841 bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA 140625 2005473 371674 1115103 216572 40519 1363 853 33038 1263 33042 171550 820 bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA 186803 371674 177971 2005473 171550 189330 128827 253238 33038 423410 86331 265975 990719 841 116085 171549 301302 28138 283168 69896 180978 -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 147802 109790 187328 33959 1596 508451 -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 133925 419005 28129 305719 28136 195950 69710 2762318 884684 -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 28132 33959 1596 508451 +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 1596 147802 109790 33959 508451 187328 +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 884684 133925 419005 28129 305719 28136 195950 69710 2762318 +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1596 33959 28132 508451 bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 543 419005 bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1654 59735 467210 28133 305719 28136 135082 195950 157 53419 69710 2762318 bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 2701 502393 109790 2098 28130 bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA 147802 -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 194 39489 1502 2098 28130 +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 39489 1502 +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA 194 2098 28130 bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 1239 1496 1485 154288 bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA 818 1350 317010 564 508451 1633 328812 487175 bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 816 1496 @@ -6207,15 +6208,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA 1903720 2212467 2137880 2292991 2044939 2763037 2049044 853 729 1735 2485925 1871022 1602169 2518605 2053615 33039 28211 2024220 2024228 2022527 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA 2137880 2137878 28116 371601 823 818 328814 820 2293024 bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA 33039 572511 39485 2292274 853 1715004 2292272 2293012 572010 301302 1602169 2763066 88431 2293047 2292232 167 729 1871022 2564099 46228 -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2518605 2564099 2212475 33039 -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 1871022 2500537 2079531 821 2293024 2292304 1288121 818 820 28117 46506 46503 823 28118 40545 47678 +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2564099 2518605 2212475 33039 853 +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 28117 1288121 47678 46506 818 820 2500537 2293024 2292304 28118 823 46503 1871022 821 2079531 40545 2022527 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA 40545 292800 bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA 2564099 bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA 214856 bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA 2585118 28117 1288121 328814 329854 46506 818 371601 871665 418240 2049043 2478488 1982626 1358 28118 1519439 823 46503 821 1852370 301301 3062497 40518 39778 bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA 28117 28026 35833 2293024 28118 2079531 40545 bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA 853 2763066 2292349 1871022 2109685 2518605 46503 28118 46506 821 216816 820 328814 33025 47678 823 28116 454154 818 329854 371601 1285585 546 1150298 387090 1358 328813 158836 1680 1352 573 487174 3062492 2358141 35833 214856 246787 907 33039 871665 2293024 562 418240 -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2564099 1267 2518605 167 225004 2293138 +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2293138 2564099 1267 2518605 225004 167 47678 820 329854 33039 bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA 239935 2585118 214856 328813 28117 1288121 328814 2358141 47678 246787 28111 338188 817 329854 28116 46506 818 820 371601 487174 216816 35833 871665 1737424 418240 29522 2500537 2292991 546 1715004 2292206 2293024 74426 33043 2293093 39486 158836 2292232 2292349 292800 1150298 1735 1358 28118 2109685 823 46503 454154 1871022 33025 626940 387090 357276 204516 310297 821 2079531 1602169 2022527 2024220 2024228 360807 1267 2518605 2137878 2053615 150055 40545 167 46228 33039 2292885 1776379 2212473 bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA 2585118 214856 328813 28117 1288121 328814 47678 329854 28116 46506 818 820 371601 487174 216816 35833 29522 2500537 2292991 546 2293012 2293024 2293093 1852381 158836 45851 2292232 2292349 2292885 292800 1150298 729 1735 2212473 573 363265 28118 2109685 823 46503 454154 1871022 33025 357276 204516 821 2079531 1602169 2022527 2024220 2024228 1852370 2564099 1267 2518605 2137878 572010 2053615 150055 40545 225004 167 39777 39778 2212475 33039 186329 bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA 821 823 818 328814 28118 820 371601 46503 28116 47678 338188 329854 28117 2293024 871665 35833 214856 328813 1150298 292800 546 33039 33025 diff --git a/bugsigdb_signatures_mixed_taxname.gmt b/bugsigdb_signatures_mixed_taxname.gmt index 0fafaa7d5..77e48d1df 100644 --- a/bugsigdb_signatures_mixed_taxname.gmt +++ b/bugsigdb_signatures_mixed_taxname.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Bacilli Gammaproteobacteria Actinomyces Corynebacterium Streptococcus Peptoniphilus Dorea Phascolarctobacterium Sutterella Actinomycetales Actinomycetaceae Alcaligenaceae Lactobacillales Streptococcaceae Veillonellaceae Enterobacterales Corynebacteriaceae Lacticaseibacillus zeae Bacillus Bacillaceae bsdb:1/1/2_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_DOWN NA Coprobacillus Cyanobacteriota bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Anaerostipes Lacticaseibacillus zeae @@ -6166,14 +6166,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA Lac bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA Shuttleworthella Lachnospiraceae Rikenellaceae Coprococcus catus Prevotella Christensenellaceae Moryella indoligenes Mediterraneibacter gnavus Roseburia bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA Lachnobacterium Muribaculaceae Moryella indoligenes Wandonia Oscillospiraceae Ruminococcus callidus Lactococcus garvieae Faecalibacterium prausnitzii Mediterraneibacter gnavus Ruminococcus Coprococcus Rikenellaceae Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA Lachnospiraceae Moryella indoligenes Shuttleworthella Muribaculaceae Rikenellaceae Dorea Erysipelotrichaceae Ethanoligenens Mediterraneibacter gnavus Enterococcaceae bacterium RF39 Mogibacterium Oribacterium Christensenellaceae Roseburia Coprococcus catus Bacteroidales Roseburia faecis Rikenella Odoribacter Candidatus Phytoplasma solani Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus iners Lactobacillus jensenii Veillonella montpellierensis Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Olsenella Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Tannerella Treponema vincentii Weeksellaceae Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Prevotella melaninogenica Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus gasseri Lactobacillus iners Lactobacillus jensenii Lactobacillus johnsonii Lactobacillus taiwanensis Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Mageeibacillus indolicus Olsenella Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Tannerella Treponema vincentii Weeksellaceae +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Lactobacillus gasseri Lactobacillus johnsonii Prevotella melaninogenica Lactobacillus taiwanensis bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Enterobacteriaceae Prevotella amnii bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Actinomyces Bergeyella Lachnoanaerobaculum saburreum Prevotella nigrescens Segatella baroniae Segatella oulorum Selenomonas infelix Tannerella Treponema Treponema socranskii Treponema vincentii Weeksellaceae bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gardnerella Gemelliphila asaccharolytica Lactobacillus jensenii Metamycoplasma hominis Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Campylobacter Clostridium moniliforme Clostridium perfringens Metamycoplasma hominis Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Clostridium moniliforme Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA Campylobacter Metamycoplasma hominis Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Bacillota Clostridioides difficile Clostridium Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA Bacteroides thetaiotaomicron Enterococcus Enterococcus canintestini Escherichia fergusonii Lactobacillus taiwanensis Limosilactobacillus vaginalis Parabacteroides goldsteinii Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Bacteroides Clostridioides difficile @@ -6207,15 +6208,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA Bacilli bacterium Bacteroidaceae bacterium Candidatus Gastranaerophilales bacterium Catenibacterium sp. AM22-15 Clostridia bacterium Clostridium lentum Erysipelotrichaceae bacterium Faecalibacterium prausnitzii Haemophilus parainfluenzae Holdemanella biformis Oscillospiraceae bacterium Parolsenella massiliensis Prevotella pectinovora Segatella hominis Spirochaetia bacterium [Ruminococcus] torques Alphaproteobacteria Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA Candidatus Gastranaerophilales bacterium Selenomonadales bacterium Bacteroides ovatus Bacteroides xylanisolvens Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Bacteroides uniformis Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA [Ruminococcus] torques Blautia Lachnospira eligens Clostridiaceae bacterium OM08-6BH Faecalibacterium prausnitzii Clostridiales bacterium KLE1615 Lachnospiraceae bacterium OM04-12BH Clostridium sp. AF34-13 Slackia isoflavoniconvertens Roseburia faecis Prevotella pectinovora Ruminococcus intestinalis Dorea longicatena Clostridium sp. OM07-10AC Eubacterium sp. AF22-8LB Treponema succinifaciens Haemophilus parainfluenzae Parolsenella massiliensis Ruminococcus bovis [Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Segatella hominis Ruminococcus bovis Victivallales bacterium [Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Parolsenella massiliensis Candidatus Cibiobacter qucibialis Prevotella merdae Phocaeicola vulgatus Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Alistipes senegalensis Bacteroides thetaiotaomicron Bacteroides uniformis Alistipes putredinis Bacteroides stercoris Parabacteroides merdae Parabacteroides distasonis Odoribacter splanchnicus Sutterella wadsworthensis Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Ruminococcus bovis Segatella hominis Victivallales bacterium [Ruminococcus] torques Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Alistipes putredinis Alistipes senegalensis Bacteroides caccae Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Candidatus Cibiobacter qucibialis Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Odoribacter splanchnicus Parabacteroides distasonis Parabacteroides merdae Parolsenella massiliensis Phocaeicola vulgatus Prevotella merdae Sutterella wadsworthensis Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA Sutterella wadsworthensis Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA Alistipes communis Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides intestinalis Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides xylanisolvens Blautia faecis Blautia wexlerae Desulfovibrionaceae bacterium Elusimicrobiales bacterium Faecalibacillus intestinalis Lactococcus lactis Odoribacter splanchnicus Oscillibacter sp. ER4 Parabacteroides distasonis Parabacteroides merdae Phocaeicola vulgatus Prevotellamassilia timonensis Roseburia hominis Ruminococcus bicirculans (ex Liu et al. 2021) Ruminococcus bromii Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA Alistipes putredinis Bifidobacterium pseudocatenulatum Bilophila wadsworthia Clostridium sp. AM22-11AC Odoribacter splanchnicus Prevotella merdae Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA Faecalibacterium prausnitzii Ruminococcus intestinalis Eubacterium sp. AM28-29 Parolsenella massiliensis Olsenella sp. GAM18 Segatella hominis Parabacteroides merdae Odoribacter splanchnicus Bacteroides stercoris Phocaeicola vulgatus Bifidobacterium longum Bacteroides uniformis Alistipes shahii Phascolarctobacterium faecium Bacteroides caccae Parabacteroides distasonis Bacteroides ovatus Paraprevotella clara Bacteroides thetaiotaomicron Bacteroides intestinalis Bacteroides xylanisolvens Megasphaera sp. BL7 Citrobacter freundii Fusicatenibacter saccharivorans Phocaeicola coprophilus Lactococcus lactis Alistipes onderdonkii Enterobacter hormaechei Bifidobacterium adolescentis Enterococcus faecium Klebsiella pneumoniae Barnesiella intestinihominis Blautia massiliensis (ex Liu et al. 2021) Anaerotignum faecicola Bilophila wadsworthia Alistipes finegoldii Bacteroides cellulosilyticus Megasphaera elsdenii [Ruminococcus] torques Blautia faecis Clostridium sp. AM22-11AC Escherichia coli Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema succinifaciens Treponema berlinense Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Roseburia sp. AM59-24XD Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema berlinense Treponema succinifaciens Bacteroides caccae Bacteroides uniformis Bacteroides intestinalis [Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA Akkermansia muciniphila Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Anaerotignum faecicola Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides finegoldii Bacteroides fragilis Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Blautia faecis Blautia massiliensis (ex Durand et al. 2017) Blautia wexlerae Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridiales bacterium KLE1615 Clostridium sp. AF27-2AA Clostridium sp. AM22-11AC Collinsella aerofaciens Coprococcus eutactus Coprococcus sp. OM04-5BH Dorea formicigenerans Enterobacter hormaechei Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Flavonifractor plautii Fusicatenibacter saccharivorans Holdemanella biformis Lactococcus lactis Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phascolarctobacterium succinatutens Phocaeicola coprophilus Phocaeicola dorei Phocaeicola massiliensis Phocaeicola plebeius Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Roseburia inulinivorans Sarcina ventriculi Segatella hominis Selenomonadales bacterium Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema succinifaciens [Ruminococcus] lactaris [Ruminococcus] torques Firmicutes bacterium AF16-15 Leyella lascolaii Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides caccae Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridium sp. AF34-13 Clostridium sp. AM22-11AC Coprococcus sp. OM04-5BH Duodenibacillus massiliensis Enterobacter hormaechei Eshraghiella crossota Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Firmicutes bacterium AF16-15 Flavonifractor plautii Fusicatenibacter saccharivorans Haemophilus parainfluenzae Holdemanella biformis Kiritimatiellia bacterium Klebsiella pneumoniae Leyella stercorea Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phocaeicola dorei Phocaeicola massiliensis Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Selenomonadales bacterium Slackia isoflavoniconvertens Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema berlinense Treponema succinifaciens Veillonella atypica Veillonella dispar Victivallales bacterium [Ruminococcus] torques Acholeplasmatales bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA Phocaeicola vulgatus Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Odoribacter splanchnicus Bacteroides uniformis Bacteroides xylanisolvens Parabacteroides merdae Bacteroides ovatus Bacteroides caccae Bacteroides finegoldii Bacteroides intestinalis Alistipes putredinis Clostridium sp. AM22-11AC Blautia faecis Bilophila wadsworthia Alistipes finegoldii Alistipes onderdonkii Fusicatenibacter saccharivorans Flavonifractor plautii Citrobacter freundii [Ruminococcus] torques Phascolarctobacterium faecium diff --git a/bugsigdb_signatures_species_metaphlan.gmt b/bugsigdb_signatures_species_metaphlan.gmt index 375d8ca23..db4b58be8 100644 --- a/bugsigdb_signatures_species_metaphlan.gmt +++ b/bugsigdb_signatures_species_metaphlan.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA k__ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus callidus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus garvieae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|s__Enterococcaceae bacterium RF39 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma solani k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis +bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Turicibacteraceae|g__Turicibacter|s__Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus canintestini k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia fergusonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus vaginalis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides goldsteinii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Parasutterella|s__Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|s__Bacilli bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|s__Bacteroidaceae bacterium k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|s__Clostridia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|s__Erysipelotrichaceae bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|s__Oscillospiraceae bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnospira|s__Lachnospira eligens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|s__Clostridiaceae bacterium OM08-6BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium OM04-12BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea longicatena k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. OM07-10AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|s__Desulfovibrionaceae bacterium k__Bacteria|p__Elusimicrobiota|c__Elusimicrobia|o__Elusimicrobiales|s__Elusimicrobiales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Faecalibacillus|s__Faecalibacillus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bicirculans (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bromii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium pseudocatenulatum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera sp. BL7 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium adolescentis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus faecium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera elsdenii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia coli k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA k__Bacteria|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides eggerthii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides fragilis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Durand et al. 2017) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF27-2AA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella aerofaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus eutactus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea formicigenerans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium succinatutens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola plebeius k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia inulinivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella lascolaii k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Duodenibacillus|s__Duodenibacillus massiliensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Eshraghiella|s__Eshraghiella crossota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella stercorea k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella atypica k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium diff --git a/bugsigdb_signatures_species_metaphlan_exact.gmt b/bugsigdb_signatures_species_metaphlan_exact.gmt index 375d8ca23..db4b58be8 100644 --- a/bugsigdb_signatures_species_metaphlan_exact.gmt +++ b/bugsigdb_signatures_species_metaphlan_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA k__ bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus callidus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus garvieae k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|s__Enterococcaceae bacterium RF39 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma solani k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis -bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii -bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii -bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis +bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii +bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii +bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Turicibacteraceae|g__Turicibacter|s__Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus canintestini k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia fergusonii k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus vaginalis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides goldsteinii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Parasutterella|s__Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|s__Bacilli bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|s__Bacteroidaceae bacterium k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|s__Clostridia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|s__Erysipelotrichaceae bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|s__Oscillospiraceae bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnospira|s__Lachnospira eligens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|s__Clostridiaceae bacterium OM08-6BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium OM04-12BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea longicatena k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. OM07-10AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|s__Desulfovibrionaceae bacterium k__Bacteria|p__Elusimicrobiota|c__Elusimicrobia|o__Elusimicrobiales|s__Elusimicrobiales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Faecalibacillus|s__Faecalibacillus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bicirculans (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bromii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium pseudocatenulatum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera sp. BL7 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium adolescentis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus faecium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Liu et al. 2021) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera elsdenii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia coli k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4 k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA k__Bacteria|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides eggerthii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides fragilis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Durand et al. 2017) k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF27-2AA k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella aerofaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus eutactus k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea formicigenerans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium succinatutens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola plebeius k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia inulinivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella lascolaii k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15 k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Duodenibacillus|s__Duodenibacillus massiliensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Eshraghiella|s__Eshraghiella crossota k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29 k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15 k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella stercorea k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51 k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella atypica k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium diff --git a/bugsigdb_signatures_species_ncbi.gmt b/bugsigdb_signatures_species_ncbi.gmt index 2d8c9d200..34d9c5477 100644 --- a/bugsigdb_signatures_species_ncbi.gmt +++ b/bugsigdb_signatures_species_ncbi.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 57037 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 57037 bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA 57037 @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA 136 bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA 116085 371674 33038 bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA 371674 40519 1363 853 33038 820 bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA 371674 33038 423410 116085 301302 69896 180978 -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 147802 109790 187328 33959 1596 508451 -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 419005 28129 305719 28136 69710 884684 -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 28132 33959 1596 508451 +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 1596 147802 109790 33959 508451 187328 +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 884684 419005 28129 305719 28136 69710 +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1596 33959 28132 508451 bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 419005 bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 467210 28133 305719 28136 135082 53419 69710 bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 502393 109790 2098 28130 bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA 147802 -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 39489 1502 2098 28130 +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 39489 1502 +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA 2098 28130 bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 1496 154288 bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA 818 317010 564 508451 1633 328812 487175 bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 1496 @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA 1903720 2212467 2137880 2292991 2044939 2763037 2049044 853 729 1735 2485925 1871022 1602169 2518605 2053615 33039 2024220 2024228 2022527 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA 2137880 2137878 28116 371601 823 818 328814 820 2293024 bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA 33039 39485 2292274 853 1715004 2292272 2293012 572010 301302 1602169 2763066 88431 2293047 2292232 167 729 1871022 2564099 46228 -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2518605 2564099 2212475 33039 -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 1871022 2500537 2079531 821 2293024 2292304 1288121 818 820 28117 46506 46503 823 28118 40545 47678 +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2564099 2518605 2212475 33039 853 +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 28117 1288121 47678 46506 818 820 2500537 2293024 2292304 28118 823 46503 1871022 821 2079531 40545 2022527 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA 40545 292800 bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA 2564099 bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA 214856 bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA 2585118 28117 1288121 328814 329854 46506 818 371601 871665 418240 2049043 2478488 1982626 1358 28118 1519439 823 46503 821 1852370 301301 3062497 40518 39778 bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA 28117 28026 35833 2293024 28118 2079531 40545 bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA 853 2763066 2292349 1871022 2109685 2518605 46503 28118 46506 821 216816 820 328814 33025 47678 823 28116 454154 818 329854 371601 1285585 546 1150298 387090 1358 328813 158836 1680 1352 573 487174 3062492 2358141 35833 214856 246787 907 33039 871665 2293024 562 418240 -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2564099 1267 2518605 167 225004 2293138 +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2293138 2564099 1267 2518605 225004 167 47678 820 329854 33039 bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA 239935 2585118 214856 328813 28117 1288121 328814 2358141 47678 246787 28111 338188 817 329854 28116 46506 818 820 371601 487174 216816 35833 871665 1737424 418240 29522 2500537 2292991 546 1715004 2292206 2293024 74426 33043 2293093 39486 158836 2292232 2292349 292800 1150298 1735 1358 28118 2109685 823 46503 454154 1871022 33025 626940 387090 357276 204516 310297 821 2079531 1602169 2022527 2024220 2024228 360807 1267 2518605 2137878 2053615 150055 40545 167 46228 33039 2292885 1776379 2212473 bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA 2585118 214856 328813 28117 1288121 328814 47678 329854 28116 46506 818 820 371601 487174 216816 35833 29522 2500537 2292991 546 2293012 2293024 2293093 1852381 158836 45851 2292232 2292349 2292885 292800 1150298 729 1735 2212473 573 363265 28118 2109685 823 46503 454154 1871022 33025 357276 204516 821 2079531 1602169 2022527 2024220 2024228 1852370 2564099 1267 2518605 2137878 572010 2053615 150055 40545 225004 167 39777 39778 2212475 33039 bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA 821 823 818 328814 28118 820 371601 46503 28116 47678 338188 329854 28117 2293024 871665 35833 214856 328813 1150298 292800 546 33039 33025 diff --git a/bugsigdb_signatures_species_ncbi_exact.gmt b/bugsigdb_signatures_species_ncbi_exact.gmt index 2d8c9d200..34d9c5477 100644 --- a/bugsigdb_signatures_species_ncbi_exact.gmt +++ b/bugsigdb_signatures_species_ncbi_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA 57037 bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA 57037 bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA 57037 @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA 136 bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA 116085 371674 33038 bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA 371674 40519 1363 853 33038 820 bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA 371674 33038 423410 116085 301302 69896 180978 -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 147802 109790 187328 33959 1596 508451 -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 419005 28129 305719 28136 69710 884684 -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 28132 33959 1596 508451 +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA 1596 147802 109790 33959 508451 187328 +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA 228603 467210 884684 419005 28129 305719 28136 69710 +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 1596 33959 28132 508451 bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 419005 bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA 467210 28133 305719 28136 135082 53419 69710 bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA 502393 109790 2098 28130 bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA 147802 -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 39489 1502 2098 28130 +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA 39489 1502 +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA 2098 28130 bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 1496 154288 bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA 818 317010 564 508451 1633 328812 487175 bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA 239935 1496 @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA 1903720 2212467 2137880 2292991 2044939 2763037 2049044 853 729 1735 2485925 1871022 1602169 2518605 2053615 33039 2024220 2024228 2022527 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA 2137880 2137878 28116 371601 823 818 328814 820 2293024 bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA 33039 39485 2292274 853 1715004 2292272 2293012 572010 301302 1602169 2763066 88431 2293047 2292232 167 729 1871022 2564099 46228 -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2518605 2564099 2212475 33039 -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 1871022 2500537 2079531 821 2293024 2292304 1288121 818 820 28117 46506 46503 823 28118 40545 47678 +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA 2079531 2024228 2564099 2518605 2212475 33039 853 +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA 28117 1288121 47678 46506 818 820 2500537 2293024 2292304 28118 823 46503 1871022 821 2079531 40545 2022527 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA 40545 292800 bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA 2564099 bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA 214856 bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA 2585118 28117 1288121 328814 329854 46506 818 371601 871665 418240 2049043 2478488 1982626 1358 28118 1519439 823 46503 821 1852370 301301 3062497 40518 39778 bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA 28117 28026 35833 2293024 28118 2079531 40545 bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA 853 2763066 2292349 1871022 2109685 2518605 46503 28118 46506 821 216816 820 328814 33025 47678 823 28116 454154 818 329854 371601 1285585 546 1150298 387090 1358 328813 158836 1680 1352 573 487174 3062492 2358141 35833 214856 246787 907 33039 871665 2293024 562 418240 -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2564099 1267 2518605 167 225004 2293138 +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA 2292991 2763037 2293093 2053569 1519439 1871022 2079531 2022527 2024220 2024228 1852370 2293138 2564099 1267 2518605 225004 167 47678 820 329854 33039 bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA 239935 2585118 214856 328813 28117 1288121 328814 2358141 47678 246787 28111 338188 817 329854 28116 46506 818 820 371601 487174 216816 35833 871665 1737424 418240 29522 2500537 2292991 546 1715004 2292206 2293024 74426 33043 2293093 39486 158836 2292232 2292349 292800 1150298 1735 1358 28118 2109685 823 46503 454154 1871022 33025 626940 387090 357276 204516 310297 821 2079531 1602169 2022527 2024220 2024228 360807 1267 2518605 2137878 2053615 150055 40545 167 46228 33039 2292885 1776379 2212473 bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA 2585118 214856 328813 28117 1288121 328814 47678 329854 28116 46506 818 820 371601 487174 216816 35833 29522 2500537 2292991 546 2293012 2293024 2293093 1852381 158836 45851 2292232 2292349 2292885 292800 1150298 729 1735 2212473 573 363265 28118 2109685 823 46503 454154 1871022 33025 357276 204516 821 2079531 1602169 2022527 2024220 2024228 1852370 2564099 1267 2518605 2137878 572010 2053615 150055 40545 225004 167 39777 39778 2212475 33039 bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA 821 823 818 328814 28118 820 371601 46503 28116 47678 338188 329854 28117 2293024 871665 35833 214856 328813 1150298 292800 546 33039 33025 diff --git a/bugsigdb_signatures_species_taxname.gmt b/bugsigdb_signatures_species_taxname.gmt index 0e915615d..40a8d359e 100644 --- a/bugsigdb_signatures_species_taxname.gmt +++ b/bugsigdb_signatures_species_taxname.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Lacticaseibacillus zeae bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Lacticaseibacillus zeae bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA Lacticaseibacillus zeae @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA Lac bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA Coprococcus catus Moryella indoligenes Mediterraneibacter gnavus bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA Moryella indoligenes Ruminococcus callidus Lactococcus garvieae Faecalibacterium prausnitzii Mediterraneibacter gnavus Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA Moryella indoligenes Mediterraneibacter gnavus Enterococcaceae bacterium RF39 Coprococcus catus Roseburia faecis Candidatus Phytoplasma solani Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus iners Lactobacillus jensenii Veillonella montpellierensis Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Treponema vincentii Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Prevotella melaninogenica Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus gasseri Lactobacillus iners Lactobacillus jensenii Lactobacillus johnsonii Lactobacillus taiwanensis Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Mageeibacillus indolicus Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Treponema vincentii +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Lactobacillus gasseri Lactobacillus johnsonii Prevotella melaninogenica Lactobacillus taiwanensis bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Prevotella amnii bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Lachnoanaerobaculum saburreum Prevotella nigrescens Segatella baroniae Segatella oulorum Selenomonas infelix Treponema socranskii Treponema vincentii bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gemelliphila asaccharolytica Lactobacillus jensenii Metamycoplasma hominis Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Clostridium moniliforme Clostridium perfringens Metamycoplasma hominis Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Clostridium moniliforme Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA Metamycoplasma hominis Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Clostridioides difficile Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA Bacteroides thetaiotaomicron Enterococcus canintestini Escherichia fergusonii Lactobacillus taiwanensis Limosilactobacillus vaginalis Parabacteroides goldsteinii Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Clostridioides difficile @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA Bacilli bacterium Bacteroidaceae bacterium Candidatus Gastranaerophilales bacterium Catenibacterium sp. AM22-15 Clostridia bacterium Clostridium lentum Erysipelotrichaceae bacterium Faecalibacterium prausnitzii Haemophilus parainfluenzae Holdemanella biformis Oscillospiraceae bacterium Parolsenella massiliensis Prevotella pectinovora Segatella hominis Spirochaetia bacterium [Ruminococcus] torques Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA Candidatus Gastranaerophilales bacterium Selenomonadales bacterium Bacteroides ovatus Bacteroides xylanisolvens Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Bacteroides uniformis Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA [Ruminococcus] torques Lachnospira eligens Clostridiaceae bacterium OM08-6BH Faecalibacterium prausnitzii Clostridiales bacterium KLE1615 Lachnospiraceae bacterium OM04-12BH Clostridium sp. AF34-13 Slackia isoflavoniconvertens Roseburia faecis Prevotella pectinovora Ruminococcus intestinalis Dorea longicatena Clostridium sp. OM07-10AC Eubacterium sp. AF22-8LB Treponema succinifaciens Haemophilus parainfluenzae Parolsenella massiliensis Ruminococcus bovis [Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Segatella hominis Ruminococcus bovis Victivallales bacterium [Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Parolsenella massiliensis Candidatus Cibiobacter qucibialis Prevotella merdae Phocaeicola vulgatus Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Alistipes senegalensis Bacteroides thetaiotaomicron Bacteroides uniformis Alistipes putredinis Bacteroides stercoris Parabacteroides merdae Parabacteroides distasonis Odoribacter splanchnicus Sutterella wadsworthensis Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Ruminococcus bovis Segatella hominis Victivallales bacterium [Ruminococcus] torques Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Alistipes putredinis Alistipes senegalensis Bacteroides caccae Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Candidatus Cibiobacter qucibialis Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Odoribacter splanchnicus Parabacteroides distasonis Parabacteroides merdae Parolsenella massiliensis Phocaeicola vulgatus Prevotella merdae Sutterella wadsworthensis Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA Sutterella wadsworthensis Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA Alistipes communis Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides intestinalis Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides xylanisolvens Blautia faecis Blautia wexlerae Desulfovibrionaceae bacterium Elusimicrobiales bacterium Faecalibacillus intestinalis Lactococcus lactis Odoribacter splanchnicus Oscillibacter sp. ER4 Parabacteroides distasonis Parabacteroides merdae Phocaeicola vulgatus Prevotellamassilia timonensis Roseburia hominis Ruminococcus bicirculans (ex Liu et al. 2021) Ruminococcus bromii Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA Alistipes putredinis Bifidobacterium pseudocatenulatum Bilophila wadsworthia Clostridium sp. AM22-11AC Odoribacter splanchnicus Prevotella merdae Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA Faecalibacterium prausnitzii Ruminococcus intestinalis Eubacterium sp. AM28-29 Parolsenella massiliensis Olsenella sp. GAM18 Segatella hominis Parabacteroides merdae Odoribacter splanchnicus Bacteroides stercoris Phocaeicola vulgatus Bifidobacterium longum Bacteroides uniformis Alistipes shahii Phascolarctobacterium faecium Bacteroides caccae Parabacteroides distasonis Bacteroides ovatus Paraprevotella clara Bacteroides thetaiotaomicron Bacteroides intestinalis Bacteroides xylanisolvens Megasphaera sp. BL7 Citrobacter freundii Fusicatenibacter saccharivorans Phocaeicola coprophilus Lactococcus lactis Alistipes onderdonkii Enterobacter hormaechei Bifidobacterium adolescentis Enterococcus faecium Klebsiella pneumoniae Barnesiella intestinihominis Blautia massiliensis (ex Liu et al. 2021) Anaerotignum faecicola Bilophila wadsworthia Alistipes finegoldii Bacteroides cellulosilyticus Megasphaera elsdenii [Ruminococcus] torques Blautia faecis Clostridium sp. AM22-11AC Escherichia coli Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema succinifaciens Treponema berlinense Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Roseburia sp. AM59-24XD Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema berlinense Treponema succinifaciens Bacteroides caccae Bacteroides uniformis Bacteroides intestinalis [Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA Akkermansia muciniphila Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Anaerotignum faecicola Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides finegoldii Bacteroides fragilis Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Blautia faecis Blautia massiliensis (ex Durand et al. 2017) Blautia wexlerae Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridiales bacterium KLE1615 Clostridium sp. AF27-2AA Clostridium sp. AM22-11AC Collinsella aerofaciens Coprococcus eutactus Coprococcus sp. OM04-5BH Dorea formicigenerans Enterobacter hormaechei Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Flavonifractor plautii Fusicatenibacter saccharivorans Holdemanella biformis Lactococcus lactis Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phascolarctobacterium succinatutens Phocaeicola coprophilus Phocaeicola dorei Phocaeicola massiliensis Phocaeicola plebeius Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Roseburia inulinivorans Sarcina ventriculi Segatella hominis Selenomonadales bacterium Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema succinifaciens [Ruminococcus] lactaris [Ruminococcus] torques Firmicutes bacterium AF16-15 Leyella lascolaii Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides caccae Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridium sp. AF34-13 Clostridium sp. AM22-11AC Coprococcus sp. OM04-5BH Duodenibacillus massiliensis Enterobacter hormaechei Eshraghiella crossota Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Firmicutes bacterium AF16-15 Flavonifractor plautii Fusicatenibacter saccharivorans Haemophilus parainfluenzae Holdemanella biformis Kiritimatiellia bacterium Klebsiella pneumoniae Leyella stercorea Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phocaeicola dorei Phocaeicola massiliensis Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Selenomonadales bacterium Slackia isoflavoniconvertens Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema berlinense Treponema succinifaciens Veillonella atypica Veillonella dispar Victivallales bacterium [Ruminococcus] torques bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA Phocaeicola vulgatus Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Odoribacter splanchnicus Bacteroides uniformis Bacteroides xylanisolvens Parabacteroides merdae Bacteroides ovatus Bacteroides caccae Bacteroides finegoldii Bacteroides intestinalis Alistipes putredinis Clostridium sp. AM22-11AC Blautia faecis Bilophila wadsworthia Alistipes finegoldii Alistipes onderdonkii Fusicatenibacter saccharivorans Flavonifractor plautii Citrobacter freundii [Ruminococcus] torques Phascolarctobacterium faecium diff --git a/bugsigdb_signatures_species_taxname_exact.gmt b/bugsigdb_signatures_species_taxname_exact.gmt index 0e915615d..40a8d359e 100644 --- a/bugsigdb_signatures_species_taxname_exact.gmt +++ b/bugsigdb_signatures_species_taxname_exact.gmt @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org bsdb:1/1/1_Colorectal-adenoma:conventional-adenoma-cases_vs_controls_UP NA Lacticaseibacillus zeae bsdb:1/2/1_Hyperplastic-Polyp:hyperplastic-polyp-cases_vs_controls_UP NA Lacticaseibacillus zeae bsdb:1/6/1_Colorectal-adenoma:Non-advanced-conventional-adenoma-cases_vs_controls_UP NA Lacticaseibacillus zeae @@ -2696,14 +2696,15 @@ bsdb:1219/5/1_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_UP NA Lac bsdb:1219/5/2_Colorectal-cancer:AOM/DSS-Cycle-3-group_vs_Control-Group_DOWN NA Coprococcus catus Moryella indoligenes Mediterraneibacter gnavus bsdb:1219/6/1_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_UP NA Moryella indoligenes Ruminococcus callidus Lactococcus garvieae Faecalibacterium prausnitzii Mediterraneibacter gnavus Bacteroides uniformis bsdb:1219/6/2_Colorectal-cancer:AOM/DSS-Cycle-4-group_vs_Control-Group_DOWN NA Moryella indoligenes Mediterraneibacter gnavus Enterococcaceae bacterium RF39 Coprococcus catus Roseburia faecis Candidatus Phytoplasma solani Candidatus Phytoplasma citri -bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus iners Lactobacillus jensenii Veillonella montpellierensis Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis -bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Treponema vincentii Mageeibacillus indolicus -bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Prevotella melaninogenica Lactobacillus johnsonii Lactobacillus gasseri Lactobacillus taiwanensis +bsdb:1220/1/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_UP NA Lactobacillus gasseri Lactobacillus iners Lactobacillus jensenii Lactobacillus johnsonii Lactobacillus taiwanensis Veillonella montpellierensis +bsdb:1220/1/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_NET-En-(norethisterone-enanthate-)-arm_DOWN NA Hoylesella shahii Lachnoanaerobaculum saburreum Mageeibacillus indolicus Prevotella amnii Prevotella denticola Segatella baroniae Segatella oulorum Treponema vincentii +bsdb:1220/2/1_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Lactobacillus gasseri Lactobacillus johnsonii Prevotella melaninogenica Lactobacillus taiwanensis bsdb:1220/2/2_Contraception:COC-(combined-oral-contraceptives)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Prevotella amnii bsdb:1220/3/1_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_UP NA Lachnoanaerobaculum saburreum Prevotella nigrescens Segatella baroniae Segatella oulorum Selenomonas infelix Treponema socranskii Treponema vincentii bsdb:1220/3/2_Contraception:Net-En-(norethisterone-enanthate)-arm_vs_CCVR-(combined-contraceptive-vaginal-ring)-arm_DOWN NA Gemelliphila asaccharolytica Lactobacillus jensenii Metamycoplasma hominis Prevotella disiens bsdb:1220/4/2_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_UP NA Lactobacillus iners -bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Clostridium moniliforme Clostridium perfringens Metamycoplasma hominis Prevotella disiens +bsdb:1220/4/3_Contraception:Crossover-[COC-(combined-oral-contraceptives)]-arm_vs_Baseline-[COC-(combined-oral-contraceptives)]-arm_DOWN NA Clostridium moniliforme Clostridium perfringens +bsdb:1220/5/1_Contraception:Crossover-[Net-En-(norethisterone-enanthate)]-arm_vs_Baseline-[Net-En-(norethisterone-enanthate)]-arm_UP NA Metamycoplasma hominis Prevotella disiens bsdb:1221/1/1_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Clostridioides difficile Turicibacter sanguinis bsdb:1221/1/2_Clostridium-difficile-infection:Survived-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_DOWN NA Bacteroides thetaiotaomicron Enterococcus canintestini Escherichia fergusonii Lactobacillus taiwanensis Limosilactobacillus vaginalis Parabacteroides goldsteinii Parasutterella excrementihominis bsdb:1221/2/1_Clostridium-difficile-infection:Euthanized-mice_vs_Mice-Before-Clostridioides-difficile-infection-(CDI)_UP NA Akkermansia muciniphila Clostridioides difficile @@ -2730,15 +2731,15 @@ bsdb:1225/4/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-b bsdb:1225/4/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-Chronic-conditions_vs_Healthy-individuals_DOWN NA Bacilli bacterium Bacteroidaceae bacterium Candidatus Gastranaerophilales bacterium Catenibacterium sp. AM22-15 Clostridia bacterium Clostridium lentum Erysipelotrichaceae bacterium Faecalibacterium prausnitzii Haemophilus parainfluenzae Holdemanella biformis Oscillospiraceae bacterium Parolsenella massiliensis Prevotella pectinovora Segatella hominis Spirochaetia bacterium [Ruminococcus] torques Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotella sp. 885 bsdb:1225/5/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_UP NA Candidatus Gastranaerophilales bacterium Selenomonadales bacterium Bacteroides ovatus Bacteroides xylanisolvens Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Bacteroides uniformis Clostridium sp. AM22-11AC bsdb:1225/5/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-medication-use_vs_Healthy-individuals_DOWN NA [Ruminococcus] torques Lachnospira eligens Clostridiaceae bacterium OM08-6BH Faecalibacterium prausnitzii Clostridiales bacterium KLE1615 Lachnospiraceae bacterium OM04-12BH Clostridium sp. AF34-13 Slackia isoflavoniconvertens Roseburia faecis Prevotella pectinovora Ruminococcus intestinalis Dorea longicatena Clostridium sp. OM07-10AC Eubacterium sp. AF22-8LB Treponema succinifaciens Haemophilus parainfluenzae Parolsenella massiliensis Ruminococcus bovis [Ruminococcus] lactaris -bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Segatella hominis Ruminococcus bovis Victivallales bacterium [Ruminococcus] torques -bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Parolsenella massiliensis Candidatus Cibiobacter qucibialis Prevotella merdae Phocaeicola vulgatus Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Alistipes senegalensis Bacteroides thetaiotaomicron Bacteroides uniformis Alistipes putredinis Bacteroides stercoris Parabacteroides merdae Parabacteroides distasonis Odoribacter splanchnicus Sutterella wadsworthensis Bacteroides caccae +bsdb:1225/6/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_UP NA Prevotella merdae Prevotella sp. P4-51 Ruminococcus bovis Segatella hominis Victivallales bacterium [Ruminococcus] torques Faecalibacterium prausnitzii +bsdb:1225/6/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-mental-health_vs_Healthy-individuals_DOWN NA Alistipes putredinis Alistipes senegalensis Bacteroides caccae Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Candidatus Cibiobacter qucibialis Clostridium sp. AM22-11AC Clostridium sp. AM33-3 Odoribacter splanchnicus Parabacteroides distasonis Parabacteroides merdae Parolsenella massiliensis Phocaeicola vulgatus Prevotella merdae Sutterella wadsworthensis Prevotella sp. 885 bsdb:1225/7/1_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_UP NA Sutterella wadsworthensis Flavonifractor plautii bsdb:1225/7/2_Health-related-quality-of-life-measurement:Unhealthy-individuals-based-on-alcohol-and-cigarette_vs_Healthy-individuals_DOWN NA Ruminococcus bovis bsdb:1225/8/1_Health-related-quality-of-life-measurement:Overall-health-phenotype-sub-category_vs_Healthy-individuals_UP NA Alistipes finegoldii bsdb:1225/9/1_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_DOWN NA Alistipes communis Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides intestinalis Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides xylanisolvens Blautia faecis Blautia wexlerae Desulfovibrionaceae bacterium Elusimicrobiales bacterium Faecalibacillus intestinalis Lactococcus lactis Odoribacter splanchnicus Oscillibacter sp. ER4 Parabacteroides distasonis Parabacteroides merdae Phocaeicola vulgatus Prevotellamassilia timonensis Roseburia hominis Ruminococcus bicirculans (ex Liu et al. 2021) Ruminococcus bromii Veillonella dispar bsdb:1225/9/2_Environmental-exposure-measurement:Individual-exposed-to-animals_vs_Individual-unexposed-to-animals_UP NA Alistipes putredinis Bifidobacterium pseudocatenulatum Bilophila wadsworthia Clostridium sp. AM22-11AC Odoribacter splanchnicus Prevotella merdae Sutterella wadsworthensis bsdb:1225/10/1_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_UP NA Faecalibacterium prausnitzii Ruminococcus intestinalis Eubacterium sp. AM28-29 Parolsenella massiliensis Olsenella sp. GAM18 Segatella hominis Parabacteroides merdae Odoribacter splanchnicus Bacteroides stercoris Phocaeicola vulgatus Bifidobacterium longum Bacteroides uniformis Alistipes shahii Phascolarctobacterium faecium Bacteroides caccae Parabacteroides distasonis Bacteroides ovatus Paraprevotella clara Bacteroides thetaiotaomicron Bacteroides intestinalis Bacteroides xylanisolvens Megasphaera sp. BL7 Citrobacter freundii Fusicatenibacter saccharivorans Phocaeicola coprophilus Lactococcus lactis Alistipes onderdonkii Enterobacter hormaechei Bifidobacterium adolescentis Enterococcus faecium Klebsiella pneumoniae Barnesiella intestinihominis Blautia massiliensis (ex Liu et al. 2021) Anaerotignum faecicola Bilophila wadsworthia Alistipes finegoldii Bacteroides cellulosilyticus Megasphaera elsdenii [Ruminococcus] torques Blautia faecis Clostridium sp. AM22-11AC Escherichia coli Blautia wexlerae -bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema succinifaciens Treponema berlinense Roseburia sp. AM59-24XD +bsdb:1225/10/2_Diet-measurement:Food-frequency-consumption(Everyday)_vs_Food-frequency-consumption(Never/Rarely)_DOWN NA Catenibacterium sp. AM22-15 Clostridium lentum Coprococcus sp. OM04-5BH Lentisphaeria bacterium Oscillibacter sp. ER4 Parolsenella massiliensis Prevotella merdae Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Roseburia sp. AM59-24XD Ruminococcus bovis Sarcina ventriculi Segatella hominis Treponema berlinense Treponema succinifaciens Bacteroides caccae Bacteroides uniformis Bacteroides intestinalis [Ruminococcus] torques bsdb:1225/11/1_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_UP NA Akkermansia muciniphila Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Anaerotignum faecicola Bacteroides caccae Bacteroides cellulosilyticus Bacteroides eggerthii Bacteroides finegoldii Bacteroides fragilis Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Blautia faecis Blautia massiliensis (ex Durand et al. 2017) Blautia wexlerae Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridiales bacterium KLE1615 Clostridium sp. AF27-2AA Clostridium sp. AM22-11AC Collinsella aerofaciens Coprococcus eutactus Coprococcus sp. OM04-5BH Dorea formicigenerans Enterobacter hormaechei Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Flavonifractor plautii Fusicatenibacter saccharivorans Holdemanella biformis Lactococcus lactis Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phascolarctobacterium succinatutens Phocaeicola coprophilus Phocaeicola dorei Phocaeicola massiliensis Phocaeicola plebeius Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Roseburia inulinivorans Sarcina ventriculi Segatella hominis Selenomonadales bacterium Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema succinifaciens [Ruminococcus] lactaris [Ruminococcus] torques Firmicutes bacterium AF16-15 Leyella lascolaii Kiritimatiellia bacterium bsdb:1225/11/2_Socioeconomic-status:Subjects-from-the-wealthier-households-based-on-economic-factors_vs_Subjects-from-the-least-well-off-households-based-on-economic-factors_DOWN NA Alistipes communis Alistipes finegoldii Alistipes onderdonkii Alistipes putredinis Alistipes senegalensis Alistipes shahii Bacteroides caccae Bacteroides intestinalis Bacteroides ovatus Bacteroides stercoris Bacteroides thetaiotaomicron Bacteroides uniformis Bacteroides xylanisolvens Barnesiella intestinihominis Bifidobacterium longum Bilophila wadsworthia Brachyspira aalborgi Candidatus Cibiobacter qucibialis Catenibacterium sp. AM22-15 Citrobacter freundii Clostridium sp. AF34-13 Clostridium sp. AM22-11AC Coprococcus sp. OM04-5BH Duodenibacillus massiliensis Enterobacter hormaechei Eshraghiella crossota Eubacterium sp. AF22-8LB Eubacterium sp. AM28-29 Firmicutes bacterium AF16-15 Flavonifractor plautii Fusicatenibacter saccharivorans Haemophilus parainfluenzae Holdemanella biformis Kiritimatiellia bacterium Klebsiella pneumoniae Leyella stercorea Odoribacter splanchnicus Olsenella sp. GAM18 Parabacteroides distasonis Parabacteroides merdae Paraprevotella clara Parolsenella massiliensis Phascolarctobacterium faecium Phocaeicola dorei Phocaeicola massiliensis Phocaeicola vulgatus Prevotella merdae Prevotella pectinovora Prevotella sp. 885 Prevotella sp. P3-120 Prevotella sp. P4-51 Prevotellamassilia timonensis Ruminococcus bovis Sarcina ventriculi Segatella hominis Selenomonadales bacterium Slackia isoflavoniconvertens Spirochaetia bacterium Streptococcus lutetiensis Sutterella wadsworthensis Treponema berlinense Treponema succinifaciens Veillonella atypica Veillonella dispar Victivallales bacterium [Ruminococcus] torques bsdb:1225/12/1_Self-reported-educational-attainment:Subjects-from-wealthier-households-based-on-educational-attainment_vs_Subjects-from-the-least-well-off-households-based-on-educational-attainment_UP NA Phocaeicola vulgatus Parabacteroides distasonis Bacteroides thetaiotaomicron Alistipes shahii Odoribacter splanchnicus Bacteroides uniformis Bacteroides xylanisolvens Parabacteroides merdae Bacteroides ovatus Bacteroides caccae Bacteroides finegoldii Bacteroides intestinalis Alistipes putredinis Clostridium sp. AM22-11AC Blautia faecis Bilophila wadsworthia Alistipes finegoldii Alistipes onderdonkii Fusicatenibacter saccharivorans Flavonifractor plautii Citrobacter freundii [Ruminococcus] torques Phascolarctobacterium faecium diff --git a/file_size.csv b/file_size.csv index 39c5a557c..11c53b6da 100644 --- a/file_size.csv +++ b/file_size.csv @@ -2561,3 +2561,4 @@ "2025-01-15_13:58_UTC" "4898" "5742" "4898" "5742" "4898" "5742" "6678" "6678" "6678" "3016" "3016" "3016" "3016" "3016" "3016" "4508" "7776" "7382" "1368" "2025-01-15_14:58_UTC" "4898" "5742" "4898" "5742" "4898" "5742" "6678" "6678" "6678" "3016" "3016" "3016" "3016" "3016" "3016" "4508" "7776" "7382" "1368" "2025-01-15_15:58_UTC" "4898" "5742" "4898" "5742" "4898" "5742" "6679" "6679" "6679" "3016" "3016" "3016" "3016" "3016" "3016" "4511" "7778" "7382" "1368" +"2025-01-15_16:58_UTC" "4898" "5738" "4898" "5738" "4898" "5738" "6680" "6680" "6680" "3017" "3017" "3017" "3017" "3017" "3017" "4511" "7778" "7383" "1368" diff --git a/full_dump.csv b/full_dump.csv index 61d2b247f..c62fb5015 100644 --- a/full_dump.csv +++ b/full_dump.csv @@ -1,4 +1,4 @@ -# BugSigDB 2025-01-15_15:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org +# BugSigDB 2025-01-15_16:58_UTC, License: Creative Commons Attribution 4.0 International, URL: https://bugsigdb.org BSDB ID,Study,Study design,PMID,DOI,URL,Authors list,Title,Journal,Year,Keywords,Experiment,Location of subjects,Host species,Body site,UBERON ID,Condition,EFO ID,Group 0 name,Group 1 name,Group 1 definition,Group 0 sample size,Group 1 sample size,Antibiotics exclusion,Sequencing type,16S variable region,Sequencing platform,Statistical test,Significance threshold,MHT correction,LDA Score above,Matched on,Confounders controlled for,Pielou,Shannon,Chao1,Simpson,Inverse Simpson,Richness,Signature page name,Source,Curated date,Curator,Revision editor,Description,Abundance in Group 1,MetaPhlAn taxon names,NCBI Taxonomy IDs,State,Reviewer bsdb:1/1/1,Study 1,case-control,28038683,10.1186/s40168-016-0218-6,NA,"Peters BA, Dominianni C, Shapiro JA, Church TR, Wu J, Miller G, Yuen E, Freiman H, Lustbader I, Salik J, Friedlander C, Hayes RB , Ahn J",The gut microbiota in conventional and serrated precursors of colorectal cancer,Microbiome,2016,"Adenoma, Cancer, Colorectal, Microbiome, Microbiota, Polyp, Serrated",Experiment 1,United States of America,Homo sapiens,Feces,UBERON:0001988,Colorectal adenoma,EFO:0005406,controls,conventional adenoma cases,"conventional adenoma cases; those with at least one tubular or tubulovillous adenoma and no other polyps of hyperplastic, SSA, or unclassified histology. HP cases; having at least one HP, with no other polyps of tubular, tubulovillous, SSA, or unclassified histology. SSA cases; having at least one SSA, with or without HP(s), and with no other polyps of tubular, tubulovillous, or unclassified histology. Proximal polyps; polyps located in the cecum, ascending colon, hepatic flexure, transverse colon, or splenic flexure. Distal polyps; polyps located in the descending colon, sigmoid colon, or rectum.",323,144,NYU included who had not been on long-term antibiotic treatment,16S,4,Illumina,DESeq2,0.1,TRUE,NA,NA,"age,body mass index,sex",NA,decreased,NA,NA,NA,decreased,Signature 1,Table 2 + Supplemental Table S5 + S3+ S4,10 January 2021,Levi Waldron,WikiWorks,"Differential abundance was detected by the “DESeq” function in the DESeq2 package. All classes and genera with an FDR-adjusted q < 0.10 are included in the table. Models were adjusted for sex, age, study, and categorical BMI. See Additional file 1: Table S5 for comparisons at the phylum, order, and family level",increased,"k__Bacteria|p__Bacillota|c__Bacilli,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae|g__Corynebacterium,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus,k__Bacteria|p__Bacillota|c__Tissierellia|o__Tissierellales|f__Peptoniphilaceae|g__Peptoniphilus,k__Bacteria|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea,k__Bacteria|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae,k__Bacteria|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Alcaligenaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae,k__Bacteria|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae,k__Bacteria|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales,k__Bacteria|p__Actinomycetota|c__Actinomycetes|o__Mycobacteriales|f__Corynebacteriaceae,k__Bacteria|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lacticaseibacillus|s__Lacticaseibacillus zeae,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae|g__Bacillus,k__Bacteria|p__Bacillota|c__Bacilli|o__Bacillales|f__Bacillaceae",2|1239|91061;2|1224|1236;2|201174|1760|2037|2049|1654;2|201174|1760|85007|1653|1716;2|1239|91061|186826|1300|1301;2|1239|1737404|1737405|1570339|162289;2|1239|186801|3085636|186803|189330;2|1239|909932|1843488|909930|33024;2|1224|28216|80840|995019|40544;2|201174|1760|2037;2|201174|1760|2037|2049;2|1224|28216|80840|506;2|1239|91061|186826;2|1239|91061|186826|1300;2|1239|909932|1843489|31977;2|1224|1236|91347;2|201174|1760|85007|1653;2|1239|91061|186826|33958|2759736|57037;2|1239|91061|1385|186817|1386;2|1239|91061|1385|186817,Complete,Fatima bsdb:1/1/2,Study 1,case-control,28038683,10.1186/s40168-016-0218-6,NA,"Peters BA, Dominianni C, Shapiro JA, Church TR, Wu J, Miller G, Yuen E, Freiman H, Lustbader I, Salik J, Friedlander C, Hayes RB , Ahn J",The gut microbiota in conventional and serrated precursors of colorectal cancer,Microbiome,2016,"Adenoma, Cancer, Colorectal, Microbiome, Microbiota, Polyp, Serrated",Experiment 1,United States of America,Homo sapiens,Feces,UBERON:0001988,Colorectal adenoma,EFO:0005406,controls,conventional adenoma cases,"conventional adenoma cases; those with at least one tubular or tubulovillous adenoma and no other polyps of hyperplastic, SSA, or unclassified histology. HP cases; having at least one HP, with no other polyps of tubular, tubulovillous, SSA, or unclassified histology. SSA cases; having at least one SSA, with or without HP(s), and with no other polyps of tubular, tubulovillous, or unclassified histology. Proximal polyps; polyps located in the cecum, ascending colon, hepatic flexure, transverse colon, or splenic flexure. Distal polyps; polyps located in the descending colon, sigmoid colon, or rectum.",323,144,NYU included who had not been on long-term antibiotic treatment,16S,4,Illumina,DESeq2,0.1,TRUE,NA,NA,"age,body mass index,sex",NA,decreased,NA,NA,NA,decreased,Signature 2,Table 2 + Supplemental Table S5 + S3+ S4,10 January 2021,Levi Waldron,WikiWorks,"Differential abundance was detected by the “DESeq” function in the DESeq2 package. All classes and genera with an FDR-adjusted q < 0.10 are included in the table. Models were adjusted for sex, age, study, and categorical BMI. See Additional file 1: Table S5 for comparisons at the phylum, order, and family level",decreased,"k__Bacteria|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Coprobacillus,k__Bacteria|p__Cyanobacteriota",2|1239|526524|526525|2810280|100883;2|1117,Complete,Shaimaa Elsafoury @@ -7234,15 +7234,15 @@ bsdb:1219/5/1,Study 1219,laboratory experiment,24828543,10.1038/srep04985,http:/ bsdb:1219/5/2,Study 1219,laboratory experiment,24828543,10.1038/srep04985,http://www.nature.com/scientificreports,"Liang X, Li H, Tian G , Li S",Dynamic microbe and molecule networks in a mouse model of colitis-associated colorectal cancer,Scientific reports,2014,NA,Experiment 5,China,Mus musculus,Feces,UBERON:0001988,Colorectal cancer,EFO:0005842,Control Group,AOM/DSS Cycle 3 group,Mice treated with AOM/DSS cycle 3,10,NA,NA,16S,3,Illumina,edgeR,0.05,TRUE,NA,NA,NA,NA,unchanged,unchanged,unchanged,unchanged,unchanged,Signature 2,Table S4,19 November 2024,Wendy640,"Wendy640,KateRasheed","Differential OTUs after 3 cycles of AOM/DSS treatment, indicating microbial changes at advanced disease stages.",decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Christensenellales|f__Christensenellaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia",2|1783272|1239|186801|3085636|186803|177971;2|1783272|1239|186801|3085636|186803;2|3379134|976|200643|171549|171550;2|1783272|1239|186801|3085636|186803|33042|116085;2|3379134|976|200643|171549|171552|838;2|1783272|1239|186801|3082768|990719;2|1783272|1239|186801|3085636|186803|437755|371674;2|1783272|1239|186801|3085636|186803|2316020|33038;2|1783272|1239|186801|3085636|186803|841,Complete,Svetlana up bsdb:1219/6/1,Study 1219,laboratory experiment,24828543,10.1038/srep04985,http://www.nature.com/scientificreports,"Liang X, Li H, Tian G , Li S",Dynamic microbe and molecule networks in a mouse model of colitis-associated colorectal cancer,Scientific reports,2014,NA,Experiment 6,China,Mus musculus,Feces,UBERON:0001988,Colorectal cancer,EFO:0005842,Control Group,AOM/DSS Cycle 4 group,Mice treated with AOM/DSS cycle 4,10,NA,NA,16S,3,Illumina,edgeR,0.05,TRUE,NA,NA,NA,NA,unchanged,unchanged,unchanged,unchanged,unchanged,Signature 1,Table S4,19 November 2024,Wendy640,"Wendy640,KateRasheed","Differential OTUs after 4 cycles of AOM/DSS treatment, representing microbiota alterations during late-stage colorectal cancer.",increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnobacterium,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Crocinitomicaceae|g__Wandonia,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus callidus,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus garvieae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis",2|1783272|1239|186801|3085636|186803|140625;2|3379134|976|200643|171549|2005473;2|1783272|1239|186801|3085636|186803|437755|371674;2|3379134|976|117743|200644|1853230|1115103;2|1783272|1239|186801|186802|216572;2|1783272|1239|186801|186802|216572|1263|40519;2|1783272|1239|91061|186826|1300|1357|1363;2|1783272|1239|186801|186802|216572|216851|853;2|1783272|1239|186801|3085636|186803|2316020|33038;2|1783272|1239|186801|186802|216572|1263;2|1783272|1239|186801|3085636|186803|33042;2|3379134|976|200643|171549|171550;2|3379134|976|200643|171549|815|816|820,Complete,Svetlana up bsdb:1219/6/2,Study 1219,laboratory experiment,24828543,10.1038/srep04985,http://www.nature.com/scientificreports,"Liang X, Li H, Tian G , Li S",Dynamic microbe and molecule networks in a mouse model of colitis-associated colorectal cancer,Scientific reports,2014,NA,Experiment 6,China,Mus musculus,Feces,UBERON:0001988,Colorectal cancer,EFO:0005842,Control Group,AOM/DSS Cycle 4 group,Mice treated with AOM/DSS cycle 4,10,NA,NA,16S,3,Illumina,edgeR,0.05,TRUE,NA,NA,NA,NA,unchanged,unchanged,unchanged,unchanged,unchanged,Signature 2,Table S4,19 November 2024,Wendy640,"Wendy640,KateRasheed","Differential OTUs after 4 cycles of AOM/DSS treatment, representing microbiota alterations during late-stage colorectal cancer.",decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Moryella|s__Moryella indoligenes,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Shuttleworthella,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Muribaculaceae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ethanoligenens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__Mediterraneibacter gnavus,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|s__Enterococcaceae bacterium RF39,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Anaerovoracaceae|g__Mogibacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Oribacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Christensenellales|f__Christensenellaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus catus,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Rikenella,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter,k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma solani,k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales|f__Acholeplasmataceae|g__Candidatus Phytoplasma|s__Candidatus Phytoplasma citri",2|1783272|1239|186801|3085636|186803;2|1783272|1239|186801|3085636|186803|437755|371674;2|1783272|1239|186801|3085636|186803|177971;2|3379134|976|200643|171549|2005473;2|3379134|976|200643|171549|171550;2|1783272|1239|186801|3085636|186803|189330;2|1783272|1239|526524|526525|128827;2|1783272|1239|186801|186802|216572|253238;2|1783272|1239|186801|3085636|186803|2316020|33038;2|1783272|1239|91061|186826|81852|423410;2|1783272|1239|186801|3082720|3030910|86331;2|1783272|1239|186801|3085636|186803|265975;2|1783272|1239|186801|3082768|990719;2|1783272|1239|186801|3085636|186803|841;2|1783272|1239|186801|3085636|186803|33042|116085;2|3379134|976|200643|171549;2|1783272|1239|186801|3085636|186803|841|301302;2|3379134|976|200643|171549|171550|28138;2|3379134|976|200643|171549|1853231|283168;2|1783272|544448|31969|186329|2146|33926|69896;2|1783272|544448|31969|186329|2146|33926|180978,Complete,Svetlana up -bsdb:1220/1/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 1,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,NET-En (norethisterone enanthate ) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,28,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,Signature 1,Table 3,14 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs Net EN (norethisterone enanthate) arm].,increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis",2|1783272|1239|91061|186826|33958|1578|147802;2|1783272|1239|91061|186826|33958|1578|109790;2|1783272|1239|909932|1843489|31977|29465|187328;2|1783272|1239|91061|186826|33958|1578|33959;2|1783272|1239|91061|186826|33958|1578|1596;2|1783272|1239|91061|186826|33958|1578|508451,Complete,NA -bsdb:1220/1/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 1,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,NET-En (norethisterone enanthate ) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,28,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,Signature 2,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover COC (combined oral contraceptives) vs Net EN (norethisterone enanthate ) arm].,decreased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus",2|3379134|976|200643|171549|171552|2974257|228603;2|1783272|1239|186801|3085636|186803|1164882|467210;2|1783272|201174|84998|84999|1643824|133925;2|3379134|976|200643|171549|171552|838|419005;2|3379134|976|200643|171549|171552|838|28129;2|3379134|976|200643|171549|171552|2974251|305719;2|3379134|976|200643|171549|171552|2974251|28136;2|3379134|976|200643|171549|2005525|195950;2|3379134|203691|203692|136|2845253|157|69710;2|3379134|976|117743|200644|2762318;2|1783272|1239|186801|186802|216572|1637257|884684,Complete,NA -bsdb:1220/2/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 2,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,32,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs CCVR (combined contraceptive vaginal ring) arm].,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis",2|976|200643|171549|171552|838|28132;2|1783272|1239|91061|186826|33958|1578|33959;2|1783272|1239|91061|186826|33958|1578|1596;2|1783272|1239|91061|186826|33958|1578|508451,Complete,NA -bsdb:1220/2/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 2,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,32,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs CCVR (combined contraceptive vaginal ring) arm].,decreased,"k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii",2|3379134|1224|1236|91347|543;2|976|200643|171549|171552|838|419005,Complete,NA -bsdb:1220/3/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 3,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,Net-En (norethisterone enanthate) arm,Participants (adolescents) who were randomized to injectable norethisterone enanthate.,32,28,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [Net-En (norethisterone enanthate) vs CCVR (combined contraceptive vaginal ring) arm].,increased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces,k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii,k__Bacteria|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae",2|1783272|201174|1760|2037|2049|1654;2|976|117743|200644|2762318|59735;2|1783272|1239|186801|3085636|186803|1164882|467210;2|976|200643|171549|171552|838|28133;2|976|200643|171549|171552|2974251|305719;2|976|200643|171549|171552|2974251|28136;2|1783272|1239|909932|909929|1843491|970|135082;2|976|200643|171549|2005525|195950;2|203691|203692|136|2845253|157;2|203691|203692|136|2845253|157|53419;2|203691|203692|136|2845253|157|69710;2|976|117743|200644|2762318,Complete,NA -bsdb:1220/3/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 3,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,Net-En (norethisterone enanthate) arm,Participants (adolescents) who were randomized to injectable norethisterone enanthate.,32,28,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [Net-En (norethisterone enanthate) vs CCVR (combined contraceptive vaginal ring) arm].,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii,k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens",2|1783272|201174|1760|85004|31953|2701;2|1783272|1239|91061|1385|539738|3076174|502393;2|1783272|1239|91061|186826|33958|1578|109790;2|1783272|544448|2790996|2895623|2895509|2098;2|976|200643|171549|171552|838|28130,Complete,NA -bsdb:1220/4/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 4,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [COC (combined oral contraceptives)] arm,Crossover [COC (combined oral contraceptives)] arm,Participants (adolescents) who were randomized to combined oral contraceptives at crossover.,NA,NA,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,Signature 2,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs Net EN (norethisterone enanthate) arm ].,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners,2|1783272|1239|91061|186826|33958|1578|147802,Complete,NA -bsdb:1220/4/3,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 4,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [COC (combined oral contraceptives)] arm,Crossover [COC (combined oral contraceptives)] arm,Participants (adolescents) who were randomized to combined oral contraceptives at crossover.,NA,NA,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,Signature 3,Table 3,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs Net EN (norethisterone enanthate) arm ].,decreased,"k__Bacteria|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens,k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens",2|29547|3031852|213849|72294|194;2|1783272|1239|186801|186802|31979|1485|39489;2|1783272|1239|186801|186802|31979|1485|1502;2|1783272|544448|2790996|2895623|2895509|2098;2|976|200643|171549|171552|838|28130,Complete,NA -bsdb:1220/5/NA,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 5,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [Net-En (norethisterone enanthate)] arm,Crossover [Net-En (norethisterone enanthate)] arm,Participants (adolescents) who were randomized to norethisterone enanthate at crossover.,NA,NA,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA +bsdb:1220/1/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 1,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,NET-En (norethisterone enanthate ) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,28,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3A,14 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs Net EN (norethisterone enanthate) arm].,increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella montpellierensis",2|1783272|1239|91061|186826|33958|1578|1596;2|1783272|1239|91061|186826|33958|1578|147802;2|1783272|1239|91061|186826|33958|1578|109790;2|1783272|1239|91061|186826|33958|1578|33959;2|1783272|1239|91061|186826|33958|1578|508451;2|1783272|1239|909932|1843489|31977|29465|187328,Complete,NA +bsdb:1220/1/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 1,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,NET-En (norethisterone enanthate ) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,28,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3A,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover COC (combined oral contraceptives) vs Net EN (norethisterone enanthate ) arm].,decreased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Hoylesella|s__Hoylesella shahii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Mageeibacillus|s__Mageeibacillus indolicus,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella denticola,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae",2|3379134|976|200643|171549|171552|2974257|228603;2|1783272|1239|186801|3085636|186803|1164882|467210;2|1783272|1239|186801|186802|216572|1637257|884684;2|1783272|201174|84998|84999|1643824|133925;2|3379134|976|200643|171549|171552|838|419005;2|3379134|976|200643|171549|171552|838|28129;2|3379134|976|200643|171549|171552|2974251|305719;2|3379134|976|200643|171549|171552|2974251|28136;2|3379134|976|200643|171549|2005525|195950;2|3379134|203691|203692|136|2845253|157|69710;2|3379134|976|117743|200644|2762318,Complete,NA +bsdb:1220/2/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 2,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,32,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3A,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs CCVR (combined contraceptive vaginal ring) arm].,increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus gasseri,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus johnsonii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella melaninogenica,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis",2|1783272|1239|91061|186826|33958|1578|1596;2|1783272|1239|91061|186826|33958|1578|33959;2|3379134|976|200643|171549|171552|838|28132;2|1783272|1239|91061|186826|33958|1578|508451,Complete,NA +bsdb:1220/2/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 2,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,COC (combined oral contraceptives) arm,Participants (adolescents) who were randomized to combined oral contraceptives.,32,35,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3A,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [COC (combined oral contraceptives) vs CCVR (combined contraceptive vaginal ring) arm].,decreased,"k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella amnii",2|3379134|1224|1236|91347|543;2|3379134|976|200643|171549|171552|838|419005,Complete,NA +bsdb:1220/3/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 3,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,Net-En (norethisterone enanthate) arm,Participants (adolescents) who were randomized to injectable norethisterone enanthate.,32,28,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3A,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [Net-En (norethisterone enanthate) vs CCVR (combined contraceptive vaginal ring) arm].,increased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Actinomycetales|f__Actinomycetaceae|g__Actinomyces,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae|g__Bergeyella,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnoanaerobaculum|s__Lachnoanaerobaculum saburreum,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella nigrescens,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella baroniae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella oulorum,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|f__Selenomonadaceae|g__Selenomonas|s__Selenomonas infelix,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Tannerella,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema socranskii,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema vincentii,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Flavobacteriia|o__Flavobacteriales|f__Weeksellaceae",2|1783272|201174|1760|2037|2049|1654;2|3379134|976|117743|200644|2762318|59735;2|1783272|1239|186801|3085636|186803|1164882|467210;2|3379134|976|200643|171549|171552|838|28133;2|3379134|976|200643|171549|171552|2974251|305719;2|3379134|976|200643|171549|171552|2974251|28136;2|1783272|1239|909932|909929|1843491|970|135082;2|3379134|976|200643|171549|2005525|195950;2|3379134|203691|203692|136|2845253|157;2|3379134|203691|203692|136|2845253|157|53419;2|3379134|203691|203692|136|2845253|157|69710;2|3379134|976|117743|200644|2762318,Complete,NA +bsdb:1220/3/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 3,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,CCVR (combined contraceptive vaginal ring) arm,Net-En (norethisterone enanthate) arm,Participants (adolescents) who were randomized to injectable norethisterone enanthate.,32,28,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3A,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at crossover [Net-En (norethisterone enanthate) vs CCVR (combined contraceptive vaginal ring) arm].,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Gardnerella,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Bacillales|f__Gemellaceae|g__Gemelliphila|s__Gemelliphila asaccharolytica,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus jensenii,k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens",2|1783272|201174|1760|85004|31953|2701;2|1783272|1239|91061|1385|539738|3076174|502393;2|1783272|1239|91061|186826|33958|1578|109790;2|1783272|544448|2790996|2895623|2895509|2098;2|3379134|976|200643|171549|171552|838|28130,Complete,NA +bsdb:1220/4/2,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 4,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [COC (combined oral contraceptives)] arm,Crossover [COC (combined oral contraceptives)] arm,Participants (adolescents) who were randomized to combined oral contraceptives at crossover.,34,34,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 2,Table 3B,15 November 2024,Tosin,Tosin,DESeq2 analysis of taxa differentially abundant between randomized study arms at Baseline [COC (combined oral contraceptives) vs Crossover [COC (combined oral contraceptives)].,increased,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus iners,2|1783272|1239|91061|186826|33958|1578|147802,Complete,NA +bsdb:1220/4/3,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 4,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [COC (combined oral contraceptives)] arm,Crossover [COC (combined oral contraceptives)] arm,Participants (adolescents) who were randomized to combined oral contraceptives at crossover.,34,34,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 3,Table 3B,15 November 2024,Tosin,Tosin,Deseq2 analysis of taxa differentially abundant between randomized study arms at Baseline [COC (combined oral contraceptives) vs Crossover [COC (combined oral contraceptives)].,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium moniliforme,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium perfringens",2|1783272|1239|186801|186802|31979|1485|39489;2|1783272|1239|186801|186802|31979|1485|1502,Complete,NA +bsdb:1220/5/1,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 5,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [Net-En (norethisterone enanthate)] arm,Crossover [Net-En (norethisterone enanthate)] arm,Participants (adolescents) who were randomized to norethisterone enanthate at crossover.,32,32,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,unchanged,NA,NA,NA,NA,Signature 1,Table 3B,15 January 2025,Tosin,Tosin,Deseq2 analysis of taxa differentially abundant between randomized study arms at Baseline [Net-En (norethisterone enanthate) vs Crossover [Net-En (norethisterone enanthate)].,increased,"k__Bacteria|k__Pseudomonadati|p__Campylobacterota|c__Epsilonproteobacteria|o__Campylobacterales|f__Campylobacteraceae|g__Campylobacter,k__Bacteria|k__Bacillati|p__Mycoplasmatota|o__Mycoplasmoidales|f__Metamycoplasmataceae|g__Metamycoplasma|s__Metamycoplasma hominis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella disiens",2|3379134|29547|3031852|213849|72294|194;2|1783272|544448|2790996|2895623|2895509|2098;2|3379134|976|200643|171549|171552|838|28130,Complete,NA bsdb:1220/6/NA,Study 1220,randomized controlled trial,33149114,10.1038/s41467-020-19382-9,NA,"Balle C, Konstantinus IN, Jaumdally SZ, Havyarimana E, Lennard K, Esra R, Barnabas SL, Happel AU, Moodie Z, Gill K, Pidwell T, Karaoz U, Brodie E, Maseko V, Gamieldien H, Bosinger SE, Myer L, Bekker LG, Passmore JS , Jaspan HB",Hormonal contraception alters vaginal microbiota and cytokines in South African adolescents in a randomized trial,Nature communications,2020,NA,Experiment 6,South Africa,Homo sapiens,Vagina,UBERON:0000996,Contraception,EFO:0009520,Baseline [Baseline [Net-En (norethisterone enanthate)] arm)] arm,Crossover [Net-En (norethisterone enanthate)] arm)] arm,Participants (adolescents) who were randomized to Baseline norethisterone enanthate arm at crossover.,NA,NA,3 months,16S,4,Illumina,DESeq2,0.05,TRUE,NA,NA,antibiotic exposure,NA,decreased,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA,NA bsdb:1221/1/1,Study 1221,laboratory experiment,38951925,10.1186/s40168-024-01820-1,NA,"Rasmussen TS, Mao X, Forster S, Larsen SB, Von Münchow A, Tranæs KD, Brunse A, Larsen F, Mejia JLC, Adamberg S, Hansen AK, Adamberg K, Hansen CHF , Nielsen DS",Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments,Microbiome,2024,NA,Experiment 1,Denmark,Mus musculus,Feces,UBERON:0001988,Clostridium difficile infection,EFO:0009130,Mice Before Clostridioides difficile infection (CDI),Survived mice,"Mice that survived a Clostridioides difficile infection (CDI) followed by one of 4 FVT (fecal virome transplantation), FMT (fecal microbiota transplantaiton) or saline treatments until study termination.",48,24,NA,16S,3,Illumina,DESeq2,0.05,TRUE,NA,NA,NA,NA,increased,NA,NA,NA,NA,Signature 1,Figure 7A,16 November 2024,Tosin,Tosin,Differential abundance of significantly different bacterial taxa between Before CDI (Clostridioides difficile Infection) and Survived mice.,increased,"k__Bacteria|k__Pseudomonadati|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila,k__Bacteria|k__Bacillati|p__Bacillota,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Peptostreptococcales|f__Peptostreptococcaceae|g__Clostridioides|s__Clostridioides difficile,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Turicibacteraceae|g__Turicibacter|s__Turicibacter sanguinis",2|3379134|74201|203494|48461|1647988|239934|239935;2|1783272|1239;2|1783272|1239|186801|3082720|186804|1870884|1496;2|1783272|1239|186801|186802|31979|1485;2|1783272|1239|526524|526525|2810281|191303|154288,Complete,Svetlana up bsdb:1221/1/2,Study 1221,laboratory experiment,38951925,10.1186/s40168-024-01820-1,NA,"Rasmussen TS, Mao X, Forster S, Larsen SB, Von Münchow A, Tranæs KD, Brunse A, Larsen F, Mejia JLC, Adamberg S, Hansen AK, Adamberg K, Hansen CHF , Nielsen DS",Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments,Microbiome,2024,NA,Experiment 1,Denmark,Mus musculus,Feces,UBERON:0001988,Clostridium difficile infection,EFO:0009130,Mice Before Clostridioides difficile infection (CDI),Survived mice,"Mice that survived a Clostridioides difficile infection (CDI) followed by one of 4 FVT (fecal virome transplantation), FMT (fecal microbiota transplantaiton) or saline treatments until study termination.",48,24,NA,16S,3,Illumina,DESeq2,0.05,TRUE,NA,NA,NA,NA,increased,NA,NA,NA,NA,Signature 2,Figure 7A,16 November 2024,Tosin,Tosin,Differential abundance of significantly different bacterial taxa Between Before CDI (Clostridioides difficile infection) and Survived mice.,decreased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus canintestini,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia fergusonii,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Lactobacillus|s__Lactobacillus taiwanensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Lactobacillaceae|g__Limosilactobacillus|s__Limosilactobacillus vaginalis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides goldsteinii,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Parasutterella|s__Parasutterella excrementihominis",2|3379134|976|200643|171549|815|816|818;2|1783272|1239|91061|186826|81852|1350;2|1783272|1239|91061|186826|81852|1350|317010;2|3379134|1224|1236|91347|543|561|564;2|1783272|1239|91061|186826|33958|1578|508451;2|1783272|1239|91061|186826|33958|2742598|1633;2|3379134|976|200643|171549|2005525|375288|328812;2|3379134|1224|28216|80840|995019|577310|487175,Complete,Svetlana up @@ -7281,15 +7281,15 @@ bsdb:1225/4/1,Study 1225,"cross-sectional observational, not case-control",38968 bsdb:1225/4/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 4,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on Chronic conditions,"Unhealthy individuals based on Chronic conditions refers to those with unhealthy phenotypes like diabetes, allergies, heart disease, asthma, stomach illness, intestinal illness, arthritis",NA,688,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,16 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on chronic conditions,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|s__Bacilli bacterium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|s__Bacteroidaceae bacterium,k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|s__Clostridia bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|s__Erysipelotrichaceae bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|s__Oscillospiraceae bacterium,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Alphaproteobacteria,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885",2|1783272|1239|91061|1903720;2|976|200643|171549|815|2212467;2|1783272|1798710|1906119|2137880;2|1783272|1239|526524|526525|2810280|135858|2292991;2|1783272|1239|186801|2044939;2|1783272|1239|186801|186802|31979|1485|2763037;2|1783272|1239|526524|526525|128827|2049044;2|1783272|1239|186801|186802|216572|216851|853;2|3379134|1224|1236|135625|712|724|729;2|1783272|1239|526524|526525|128827|1573535|1735;2|1783272|1239|186801|186802|216572|2485925;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|976|200643|171549|171552|838|1602169;2|976|200643|171549|171552|2974251|2518605;2|203691|203692|2053615;2|1783272|1239|186801|3085636|186803|2316020|33039;2|3379134|1224|28211;2|976|200643|171549|171552|838|2024220;2|976|200643|171549|171552|838|2024228;2|976|200643|171549|171552|838|2022527;2|976|200643|171549|171552|838|2022527,Complete,NA bsdb:1225/5/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 5,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on medication use,"Unhealthy individuals based on medication use refers to those with unhealthy phenotypes like antibiotics, painkillers, anti-diarreal, anti-fungal, anti-parasitic, anti-hypertensive and vitamins",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on medication use.,increased,"k__Bacteria|k__Bacillati|p__Candidatus Melainabacteria|o__Candidatus Gastranaerophilales|s__Candidatus Gastranaerophilales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC",2|1783272|1798710|1906119|2137880;2|1783272|1239|909932|909929|2137878;2|976|200643|171549|815|816|28116;2|976|200643|171549|815|816|371601;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|815|816|818;2|976|200643|171549|171550|239759|328814;2|976|200643|171549|815|816|820;2|1783272|1239|186801|186802|31979|1485|2293024,Complete,NA bsdb:1225/5/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 5,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on medication use,"Unhealthy individuals based on medication use refers to those with unhealthy phenotypes like antibiotics, painkillers, anti-diarreal, anti-fungal, anti-parasitic, anti-hypertensive and vitamins",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on medication use.,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Lachnospira|s__Lachnospira eligens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|s__Clostridiaceae bacterium OM08-6BH,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|s__Lachnospiraceae bacterium OM04-12BH,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia faecis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea longicatena,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. OM07-10AC,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris",2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|1239|186801|3085636|186803|572511;2|1783272|1239|186801|3085636|186803|28050|39485;2|1783272|1239|186801|186802|31979|2292274;2|1783272|1239|186801|186802|216572|216851|853;2|1783272|1239|186801|186802|1715004;2|1783272|1239|186801|3085636|186803|2292272;2|1783272|1239|186801|186802|31979|1485|2293012;2|1783272|201174|84998|1643822|1643826|84108|572010;2|1783272|1239|186801|3085636|186803|841|301302;2|976|200643|171549|171552|838|1602169;2|1783272|1239|186801|186802|216572|1263|2763066;2|1783272|1239|186801|3085636|186803|189330|88431;2|1783272|1239|186801|186802|31979|1485|2293047;2|1783272|1239|186801|186802|186806|1730|2292232;2|203691|203692|136|2845253|157|167;2|203691|203692|136|2845253|157|167;2|3379134|1224|1236|135625|712|724|729;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|1783272|1239|186801|186802|216572|1263|2564099;2|1783272|1239|186801|3085636|186803|2316020|46228,Complete,NA -bsdb:1225/6/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 6,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on mental health,"Unhealthy individuals based on mental health refers to those with unhealthy phenotypes like dementia, reserved, anxiety, depression, openness, nervous, cognitive impairment.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on mental health,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques",2|976|200643|171549|171552|838|2079531;2|976|200643|171549|171552|838|2024228;2|976|200643|171549|171552|2974251|2518605;2|1783272|1239|186801|186802|216572|1263|2564099;2|256845|1313211|278082|2212475;2|1783272|1239|186801|3085636|186803|2316020|33039,Complete,NA -bsdb:1225/6/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 6,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on mental health,"Unhealthy individuals based on mental health refers to those with unhealthy phenotypes like dementia, reserved, anxiety, depression, openness, nervous, cognitive impairment.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on mental health,decreased,"k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae",2|1783272|201174|84998|84999|1643824|2082587|1871022;2|1783272|1239|186801|186802|2527773|2500537;2|976|200643|171549|171552|838|2079531;2|976|200643|171549|815|909656|821;2|1783272|1239|186801|186802|31979|1485|2293024;2|1783272|1239|186801|186802|31979|1485|2292304;2|976|200643|171549|171550|239759|1288121;2|976|200643|171549|815|816|818;2|976|200643|171549|815|816|820;2|976|200643|171549|171550|239759|28117;2|976|200643|171549|815|816|46506;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|1853231|283168|28118;2|3379134|1224|28216|80840|995019|40544|40545;2|976|200643|171549|815|816|47678,Complete,NA +bsdb:1225/6/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 6,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on mental health,"Unhealthy individuals based on mental health refers to those with unhealthy phenotypes like dementia, reserved, anxiety, depression, openness, nervous, cognitive impairment.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,KateRasheed,KateRasheed,Differential abundant taxa between healthy and unhealthy individuals based on mental health,increased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii",2|3379134|976|200643|171549|171552|838|2079531;2|3379134|976|200643|171549|171552|838|2024228;2|1783272|1239|186801|186802|216572|1263|2564099;2|3379134|976|200643|171549|171552|2974251|2518605;2|3379134|256845|1313211|278082|2212475;2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|1239|186801|186802|216572|216851|853,Complete,NA +bsdb:1225/6/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 6,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on mental health,"Unhealthy individuals based on mental health refers to those with unhealthy phenotypes like dementia, reserved, anxiety, depression, openness, nervous, cognitive impairment.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,17 November 2024,KateRasheed,KateRasheed,Differential abundant taxa between healthy and unhealthy individuals based on mental health,decreased,"k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM33-3,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885",2|3379134|976|200643|171549|171550|239759|28117;2|3379134|976|200643|171549|171550|239759|1288121;2|3379134|976|200643|171549|815|816|47678;2|3379134|976|200643|171549|815|816|46506;2|3379134|976|200643|171549|815|816|818;2|3379134|976|200643|171549|815|816|820;2|1783272|1239|186801|186802|2527773|2500537;2|1783272|1239|186801|186802|31979|1485|2293024;2|1783272|1239|186801|186802|31979|1485|2292304;2|3379134|976|200643|171549|1853231|283168|28118;2|3379134|976|200643|171549|2005525|375288|823;2|3379134|976|200643|171549|2005525|375288|46503;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|3379134|976|200643|171549|815|909656|821;2|3379134|976|200643|171549|171552|838|2079531;2|3379134|1224|28216|80840|995019|40544|40545;2|3379134|976|200643|171549|171552|838|2022527,Complete,NA bsdb:1225/7/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 7,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on alcohol and cigarette,"Unhealthy individuals based on unfavourable habits(alcohol and cigarette) refers to those with unhealthy phenotypes like alcohol daily frequency, cigarette use, cigarette frequency.",NA,972,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on alcohol and cigarette.,increased,"k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii",2|3379134|1224|28216|80840|995019|40544|40545;2|1783272|1239|186801|186802|216572|946234|292800,Complete,NA bsdb:1225/7/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 7,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Unhealthy individuals based on alcohol and cigarette,"Unhealthy individuals based on unfavourable habits(alcohol and cigarette) refers to those with unhealthy phenotypes like alcohol daily frequency, cigarette use, cigarette frequency.",NA,972,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and unhealthy individuals based on alcohol and cigarette.,decreased,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,2|1783272|1239|186801|186802|216572|1263|2564099,Complete,NA bsdb:1225/8/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 8,Honduras,Homo sapiens,Feces,UBERON:0001988,Health-related quality of life measurement,EFO:0011014,Healthy individuals,Overall health phenotype sub-category,"Overall health phenotype sub-category refers to those with phenotypes like fair, poor, very good, excellent",NA,1394,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,NA,NA,Differential abundant taxa between healthy and overall healthy phenotype sub-category(fair).,increased,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii,2|976|200643|171549|171550|239759|214856,Complete,NA bsdb:1225/9/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 9,Honduras,Homo sapiens,Feces,UBERON:0001988,Environmental exposure measurement,EFO:0008360,Individual unexposed to animals,Individual exposed to animals,"Individual exposed to animals refers to the villagers who reported having exposure to different types of animals, including wild animals, farm animals, and pets, affording possible zoonotic transmission.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,17 November 2024,NA,NA,Differential abundant taxa between individuals exposed or unexposed to animals,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|s__Desulfovibrionaceae bacterium,k__Bacteria|p__Elusimicrobiota|c__Elusimicrobia|o__Elusimicrobiales|s__Elusimicrobiales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Faecalibacillus|s__Faecalibacillus intestinalis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia hominis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bicirculans (ex Liu et al. 2021),k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bromii,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar",2|976|200643|171549|171550|239759|2585118;2|976|200643|171549|171550|239759|28117;2|976|200643|171549|171550|239759|1288121;2|976|200643|171549|171550|239759|328814;2|976|200643|171549|815|816|329854;2|976|200643|171549|815|816|46506;2|976|200643|171549|815|816|818;2|976|200643|171549|815|816|371601;2|1783272|1239|186801|3085636|186803|572511|871665;2|1783272|1239|186801|3085636|186803|572511|418240;2|200940|3031449|213115|194924|2049043;2|74152|641853|641854|2478488;2|1783272|1239|526524|526525|2810280|2678885|1982626;2|1783272|1239|91061|186826|1300|1357|1358;2|976|200643|171549|1853231|283168|28118;2|1783272|1239|186801|186802|216572|459786|1519439;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|815|909656|821;2|976|200643|171549|171552|1926672|1852370;2|1783272|1239|186801|3085636|186803|841|301301;2|1783272|1239|186801|186802|216572|1263|3062497;2|1783272|1239|186801|186802|216572|1263|40518;2|1783272|1239|909932|1843489|31977|29465|39778,Complete,NA bsdb:1225/9/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 9,Honduras,Homo sapiens,Feces,UBERON:0001988,Environmental exposure measurement,EFO:0008360,Individual unexposed to animals,Individual exposed to animals,"Individual exposed to animals refers to the villagers who reported having exposure to different types of animals, including wild animals, farm animals, and pets, affording possible zoonotic transmission.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,17 November 2024,NA,NA,Differential abundant taxa between individuals exposed or unexposed to animals,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium pseudocatenulatum,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis",2|976|200643|171549|171550|239759|28117;2|1783272|201174|1760|85004|31953|1678|28026;2|200940|3031449|213115|194924|35832|35833;2|1783272|1239|186801|186802|31979|1485|2293024;2|976|200643|171549|1853231|283168|28118;2|976|200643|171549|171552|838|2079531;2|3379134|1224|28216|80840|995019|40544|40545,Complete,NA bsdb:1225/10/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 10,Honduras,Homo sapiens,Feces,UBERON:0001988,Diet measurement,EFO:0008111,Food frequency consumption(Never/Rarely),Food frequency consumption(Everyday),Food frequency consumption(Everyday) refers to individuals who consumed various categories of food everyday especially Beans and Tortillas,NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 1,Table S1,18 November 2024,NA,NA,Differential abundant taxa between food frequency consumption(never/rarely) and food frequency consumption(always).,increased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Faecalibacterium|s__Faecalibacterium prausnitzii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus intestinalis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera sp. BL7,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium adolescentis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Enterococcaceae|g__Enterococcus|s__Enterococcus faecium,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Liu et al. 2021),k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Megasphaera|s__Megasphaera elsdenii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Escherichia|s__Escherichia coli,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae",2|1783272|1239|186801|186802|216572|216851|853;2|1783272|1239|186801|186802|216572|1263|2763066;2|1783272|1239|186801|186802|186806|1730|2292349;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|1783272|201174|84998|84999|1643824|133925|2109685;2|976|200643|171549|171552|2974251|2518605;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|1853231|283168|28118;2|976|200643|171549|815|816|46506;2|976|200643|171549|815|909656|821;2|1783272|201174|1760|85004|31953|1678|216816;2|976|200643|171549|815|816|820;2|976|200643|171549|171550|239759|328814;2|1783272|1239|909932|1843488|909930|33024|33025;2|976|200643|171549|815|816|47678;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|815|816|28116;2|976|200643|171549|171552|577309|454154;2|976|200643|171549|815|816|818;2|976|200643|171549|815|816|329854;2|976|200643|171549|815|816|371601;2|1783272|1239|909932|1843489|31977|906|1285585;2|3379134|1224|1236|91347|543|544|546;2|1783272|1239|186801|3085636|186803|1407607|1150298;2|976|200643|171549|815|909656|387090;2|1783272|1239|91061|186826|1300|1357|1358;2|976|200643|171549|171550|239759|328813;2|3379134|1224|1236|91347|543|547|158836;2|1783272|201174|1760|85004|31953|1678|1680;2|1783272|1239|91061|186826|81852|1350|1352;2|3379134|1224|1236|91347|543|570|573;2|976|200643|171549|2005519|397864|487174;2|1783272|1239|186801|3085636|186803|572511|3062492;2|1783272|1239|186801|3085636|3118652|2039240|2358141;2|200940|3031449|213115|194924|35832|35833;2|976|200643|171549|171550|239759|214856;2|976|200643|171549|815|816|246787;2|1783272|1239|909932|1843489|31977|906|907;2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|1239|186801|3085636|186803|572511|871665;2|1783272|1239|186801|186802|31979|1485|2293024;2|3379134|1224|1236|91347|543|561|562;2|1783272|1239|186801|3085636|186803|572511|418240,Complete,NA -bsdb:1225/10/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 10,Honduras,Homo sapiens,Feces,UBERON:0001988,Diet measurement,EFO:0008111,Food frequency consumption(Never/Rarely),Food frequency consumption(Everyday),Food frequency consumption(Everyday) refers to individuals who consumed various categories of food everyday especially Beans and Tortillas,NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,18 November 2024,NA,NA,Differential abundant taxa between food frequency consumption(never/rarely) and food frequency consumption(always).,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH,k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD",2|1783272|1239|526524|526525|2810280|135858|2292991;2|1783272|1239|186801|186802|31979|1485|2763037;2|1783272|1239|186801|3085636|186803|33042|2293093;2|256845|1313211|2053569;2|1783272|1239|186801|186802|216572|459786|1519439;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|976|200643|171549|171552|838|2079531;2|976|200643|171549|171552|838|2022527;2|976|200643|171549|171552|838|2024220;2|976|200643|171549|171552|838|2024228;2|976|200643|171549|171552|1926672|1852370;2|1783272|1239|186801|186802|216572|1263|2564099;2|1783272|1239|186801|186802|31979|1266|1267;2|976|200643|171549|171552|2974251|2518605;2|203691|203692|136|2845253|157|167;2|203691|203692|136|2845253|157|225004;2|1783272|1239|186801|3085636|186803|841|2293138,Complete,NA +bsdb:1225/10/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 10,Honduras,Homo sapiens,Feces,UBERON:0001988,Diet measurement,EFO:0008111,Food frequency consumption(Never/Rarely),Food frequency consumption(Everyday),Food frequency consumption(Everyday) refers to individuals who consumed various categories of food everyday especially Beans and Tortillas,NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,NA,NA,NA,NA,NA,Signature 2,Table S1,18 November 2024,KateRasheed,KateRasheed,Differential abundant taxa between food frequency consumption(never/rarely) and food frequency consumption(always).,decreased,"k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium lentum,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH,k__Bacteria|k__Pseudomonadati|p__Lentisphaerota|c__Lentisphaeria|s__Lentisphaeria bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Oscillibacter|s__Oscillibacter sp. ER4,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia sp. AM59-24XD,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense,k__Bacteria|k__Pseudomonadati|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|k__Pseudomonadati|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques",2|1783272|1239|526524|526525|2810280|135858|2292991;2|1783272|1239|186801|186802|31979|1485|2763037;2|1783272|1239|186801|3085636|186803|33042|2293093;2|3379134|256845|1313211|2053569;2|1783272|1239|186801|186802|216572|459786|1519439;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|3379134|976|200643|171549|171552|838|2079531;2|3379134|976|200643|171549|171552|838|2022527;2|3379134|976|200643|171549|171552|838|2024220;2|3379134|976|200643|171549|171552|838|2024228;2|3379134|976|200643|171549|171552|1926672|1852370;2|1783272|1239|186801|3085636|186803|841|2293138;2|1783272|1239|186801|186802|216572|1263|2564099;2|1783272|1239|186801|186802|31979|1266|1267;2|3379134|976|200643|171549|171552|2974251|2518605;2|3379134|203691|203692|136|2845253|157|225004;2|3379134|203691|203692|136|2845253|157|167;2|3379134|976|200643|171549|815|816|47678;2|3379134|976|200643|171549|815|816|820;2|3379134|976|200643|171549|815|816|329854;2|1783272|1239|186801|3085636|186803|2316020|33039,Complete,NA bsdb:1225/11/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 11,Honduras,Homo sapiens,Feces,UBERON:0001988,Socioeconomic status,EXO:0000114,Subjects from the least well-off households based on economic factors,Subjects from the wealthier households based on economic factors,"Subjects from the wealthier households based on economic factors such as income(travel, monthly expenditure) and household essentials(Household size, Household wealth index, TV, No electronics, Earth/sand floor, Ceramic floor, Glass windows, Unfinished windows, Clay/mud walls, Cement walls, Concrete roof, Sleeping rooms). The household wealth index is constructed based on these household essentials.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,decreased,NA,NA,NA,NA,Signature 1,Table S1,19 November 2024,KateRasheed,KateRasheed,Differential abundant taxa between subjects from the least well-off households and subjects from the wealthier households.,increased,"k__Bacteria|p__Verrucomicrobiota|c__Verrucomicrobiia|o__Verrucomicrobiales|f__Akkermansiaceae|g__Akkermansia|s__Akkermansia muciniphila,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Anaerotignaceae|g__Anaerotignum|s__Anaerotignum faecicola,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides cellulosilyticus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides eggerthii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides fragilis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia massiliensis (ex Durand et al. 2017),k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia wexlerae,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|s__Clostridiales bacterium KLE1615,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF27-2AA,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Coriobacteriaceae|g__Collinsella|s__Collinsella aerofaciens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus eutactus,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Dorea|s__Dorea formicigenerans,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Lactococcus|s__Lactococcus lactis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium succinatutens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola coprophilus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola plebeius,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Roseburia|s__Roseburia inulinivorans,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium,k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] lactaris,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella lascolaii,k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium",2|74201|203494|48461|1647988|239934|239935;2|976|200643|171549|171550|239759|2585118;2|976|200643|171549|171550|239759|214856;2|976|200643|171549|171550|239759|328813;2|976|200643|171549|171550|239759|28117;2|976|200643|171549|171550|239759|1288121;2|976|200643|171549|171550|239759|328814;2|1783272|1239|186801|3085636|3118652|2039240|2358141;2|976|200643|171549|815|816|47678;2|976|200643|171549|815|816|246787;2|976|200643|171549|815|816|28111;2|976|200643|171549|815|816|338188;2|976|200643|171549|815|816|817;2|976|200643|171549|815|816|329854;2|976|200643|171549|815|816|28116;2|976|200643|171549|815|816|46506;2|976|200643|171549|815|816|818;2|976|200643|171549|815|816|820;2|976|200643|171549|815|816|371601;2|976|200643|171549|2005519|397864|487174;2|1783272|201174|1760|85004|31953|1678|216816;2|200940|3031449|213115|194924|35832|35833;2|1783272|1239|186801|3085636|186803|572511|871665;2|1783272|1239|186801|3085636|186803|572511|1737424;2|1783272|1239|186801|3085636|186803|572511|418240;2|203691|203692|1643686|143786|29521|29522;2|1783272|1239|186801|186802|2527773|2500537;2|1783272|1239|526524|526525|2810280|135858|2292991;2|3379134|1224|1236|91347|543|544|546;2|1783272|1239|186801|186802|1715004;2|1783272|1239|186801|186802|31979|1485|2292206;2|1783272|1239|186801|186802|31979|1485|2293024;2|1783272|201174|84998|84999|84107|102106|74426;2|1783272|1239|186801|3085636|186803|33042|33043;2|1783272|1239|186801|3085636|186803|33042|2293093;2|1783272|1239|186801|3085636|186803|189330|39486;2|3379134|1224|1236|91347|543|547|158836;2|1783272|1239|186801|186802|186806|1730|2292232;2|1783272|1239|186801|186802|186806|1730|2292349;2|1783272|1239|186801|186802|216572|946234|292800;2|1783272|1239|186801|3085636|186803|1407607|1150298;2|1783272|1239|526524|526525|128827|1573535|1735;2|1783272|1239|91061|186826|1300|1357|1358;2|976|200643|171549|1853231|283168|28118;2|1783272|201174|84998|84999|1643824|133925|2109685;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|171552|577309|454154;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|1783272|1239|909932|1843488|909930|33024|33025;2|1783272|1239|909932|1843488|909930|33024|626940;2|976|200643|171549|815|909656|387090;2|976|200643|171549|815|909656|357276;2|976|200643|171549|815|909656|204516;2|976|200643|171549|815|909656|310297;2|976|200643|171549|815|909656|821;2|976|200643|171549|171552|838|2079531;2|976|200643|171549|171552|838|1602169;2|976|200643|171549|171552|838|2022527;2|976|200643|171549|171552|838|2024220;2|976|200643|171549|171552|838|2024228;2|1783272|1239|186801|3085636|186803|841|360807;2|1783272|1239|186801|186802|31979|1266|1267;2|976|200643|171549|171552|2974251|2518605;2|1783272|1239|909932|909929|2137878;2|203691|203692|2053615;2|1783272|1239|91061|186826|1300|1301|150055;2|3379134|1224|28216|80840|995019|40544|40545;2|203691|203692|136|2845253|157|167;2|1783272|1239|186801|3085636|186803|2316020|46228;2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|1239|2292885;2|976|200643|171549|171552|2974265|1776379;2|134625|1921781|2212473,Complete,NA bsdb:1225/11/2,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 11,Honduras,Homo sapiens,Feces,UBERON:0001988,Socioeconomic status,EXO:0000114,Subjects from the least well-off households based on economic factors,Subjects from the wealthier households based on economic factors,"Subjects from the wealthier households based on economic factors such as income(travel, monthly expenditure) and household essentials(Household size, Household wealth index, TV, No electronics, Earth/sand floor, Ceramic floor, Glass windows, Unfinished windows, Clay/mud walls, Cement walls, Concrete roof, Sleeping rooms). The household wealth index is constructed based on these household essentials.",NA,NA,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,decreased,NA,NA,NA,NA,Signature 2,Table S1,20 November 2024,KateRasheed,KateRasheed,Differential abundant taxa between subjects from the least well-off households and subjects from the wealthier households based on economic factors.,decreased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes communis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes senegalensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides stercoris,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Barnesiellaceae|g__Barnesiella|s__Barnesiella intestinihominis,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Actinomycetes|o__Bifidobacteriales|f__Bifidobacteriaceae|g__Bifidobacterium|s__Bifidobacterium longum,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Brachyspirales|f__Brachyspiraceae|g__Brachyspira|s__Brachyspira aalborgi,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|g__Candidatus Cibiobacter|s__Candidatus Cibiobacter qucibialis,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Coprobacillaceae|g__Catenibacterium|s__Catenibacterium sp. AM22-15,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AF34-13,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Coprococcus|s__Coprococcus sp. OM04-5BH,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Duodenibacillus|s__Duodenibacillus massiliensis,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Enterobacter|s__Enterobacter hormaechei,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Eshraghiella|s__Eshraghiella crossota,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AF22-8LB,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Eubacteriaceae|g__Eubacterium|s__Eubacterium sp. AM28-29,k__Bacteria|k__Bacillati|p__Bacillota|s__Firmicutes bacterium AF16-15,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Pasteurellales|f__Pasteurellaceae|g__Haemophilus|s__Haemophilus parainfluenzae,k__Bacteria|k__Bacillati|p__Bacillota|c__Erysipelotrichia|o__Erysipelotrichales|f__Erysipelotrichaceae|g__Holdemanella|s__Holdemanella biformis,k__Bacteria|p__Kiritimatiellota|c__Kiritimatiellia|s__Kiritimatiellia bacterium,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Klebsiella|s__Klebsiella pneumoniae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Leyella|s__Leyella stercorea,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Olsenella|s__Olsenella sp. GAM18,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Paraprevotella|s__Paraprevotella clara,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Coriobacteriales|f__Atopobiaceae|g__Parolsenella|s__Parolsenella massiliensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola dorei,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola massiliensis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella pectinovora,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. 885,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P3-120,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotella|s__Prevotella sp. P4-51,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Prevotellamassilia|s__Prevotellamassilia timonensis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Ruminococcus|s__Ruminococcus bovis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Sarcina|s__Sarcina ventriculi,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Prevotellaceae|g__Segatella|s__Segatella hominis,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Selenomonadales|s__Selenomonadales bacterium,k__Bacteria|k__Bacillati|p__Actinomycetota|c__Coriobacteriia|o__Eggerthellales|f__Eggerthellaceae|g__Slackia|s__Slackia isoflavoniconvertens,k__Bacteria|p__Spirochaetota|c__Spirochaetia|s__Spirochaetia bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Bacilli|o__Lactobacillales|f__Streptococcaceae|g__Streptococcus|s__Streptococcus lutetiensis,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Betaproteobacteria|o__Burkholderiales|f__Sutterellaceae|g__Sutterella|s__Sutterella wadsworthensis,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema berlinense,k__Bacteria|p__Spirochaetota|c__Spirochaetia|o__Spirochaetales|f__Treponemataceae|g__Treponema|s__Treponema succinifaciens,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella atypica,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Veillonellales|f__Veillonellaceae|g__Veillonella|s__Veillonella dispar,k__Bacteria|p__Lentisphaerota|c__Lentisphaeria|o__Victivallales|s__Victivallales bacterium,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Mycoplasmatota|c__Mollicutes|o__Acholeplasmatales",2|976|200643|171549|171550|239759|2585118;2|976|200643|171549|171550|239759|214856;2|976|200643|171549|171550|239759|328813;2|976|200643|171549|171550|239759|28117;2|976|200643|171549|171550|239759|1288121;2|976|200643|171549|171550|239759|328814;2|976|200643|171549|815|816|47678;2|976|200643|171549|815|816|329854;2|976|200643|171549|815|816|28116;2|976|200643|171549|815|816|46506;2|976|200643|171549|815|816|818;2|976|200643|171549|815|816|820;2|976|200643|171549|815|816|371601;2|976|200643|171549|2005519|397864|487174;2|1783272|201174|1760|85004|31953|1678|216816;2|200940|3031449|213115|194924|35832|35833;2|203691|203692|1643686|143786|29521|29522;2|1783272|1239|186801|186802|2527773|2500537;2|1783272|1239|526524|526525|2810280|135858|2292991;2|3379134|1224|1236|91347|543|544|546;2|1783272|1239|186801|186802|31979|1485|2293012;2|1783272|1239|186801|186802|31979|1485|2293024;2|1783272|1239|186801|3085636|186803|33042|2293093;2|3379134|1224|28216|80840|995019|1980697|1852381;2|3379134|1224|1236|91347|543|547|158836;2|1783272|1239|186801|3085636|186803|3342669|45851;2|1783272|1239|186801|186802|186806|1730|2292232;2|1783272|1239|186801|186802|186806|1730|2292349;2|1783272|1239|2292885;2|1783272|1239|186801|186802|216572|946234|292800;2|1783272|1239|186801|3085636|186803|1407607|1150298;2|3379134|1224|1236|135625|712|724|729;2|1783272|1239|526524|526525|128827|1573535|1735;2|134625|1921781|2212473;2|3379134|1224|1236|91347|543|570|573;2|976|200643|171549|171552|2974265|363265;2|976|200643|171549|1853231|283168|28118;2|1783272|201174|84998|84999|1643824|133925|2109685;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|171552|577309|454154;2|1783272|201174|84998|84999|1643824|2082587|1871022;2|1783272|1239|909932|1843488|909930|33024|33025;2|976|200643|171549|815|909656|357276;2|976|200643|171549|815|909656|204516;2|976|200643|171549|815|909656|821;2|976|200643|171549|171552|838|2079531;2|976|200643|171549|171552|838|1602169;2|976|200643|171549|171552|838|2022527;2|976|200643|171549|171552|838|2024220;2|976|200643|171549|171552|838|2024228;2|976|200643|171549|171552|1926672|1852370;2|1783272|1239|186801|186802|216572|1263|2564099;2|1783272|1239|186801|186802|31979|1266|1267;2|976|200643|171549|171552|2974251|2518605;2|1783272|1239|909932|909929|2137878;2|1783272|201174|84998|1643822|1643826|84108|572010;2|203691|203692|2053615;2|1783272|1239|91061|186826|1300|1301|150055;2|3379134|1224|28216|80840|995019|40544|40545;2|203691|203692|136|2845253|157|225004;2|203691|203692|136|2845253|157|167;2|1783272|1239|909932|1843489|31977|29465|39777;2|1783272|1239|909932|1843489|31977|29465|39778;2|256845|1313211|278082|2212475;2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|544448|31969|186329,Complete,NA bsdb:1225/12/1,Study 1225,"cross-sectional observational, not case-control",38968070,10.1016/j.celrep.2024.114442,NA,"Shridhar SV, Beghini F, Alexander M, Singh A, Juárez RM, Brito IL , Christakis NA","Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages",Cell reports,2024,"CP: Microbiology, economic factors, gut microbiome species, gut microbiome strains, non-western LMIC cohort, polymorphic sites, population-wide microbiome associations, social networks, uncharacterized taxa",Experiment 12,Honduras,Homo sapiens,Feces,UBERON:0001988,Self reported educational attainment,EFO:0004784,Subjects from the least well-off households based on educational attainment,Subjects from wealthier households based on educational attainment,"Subjects from wealthier households based on educational attainment refers to those that attained Primary(1-3), Middle (4–6), and Secondary (>6)",NA,1620,NA,WMS,NA,Illumina,Mixed-Effects Regression,0.05,TRUE,NA,NA,"body mass index,sex",NA,decreased,NA,NA,NA,NA,Signature 1,Table S1,19 November 2024,NA,NA,Differential abundant taxa between Primary (1–3) and Middle (4–6)/Secondary (>6) educational levels.,increased,"k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Phocaeicola|s__Phocaeicola vulgatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides distasonis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides thetaiotaomicron,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes shahii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Odoribacteraceae|g__Odoribacter|s__Odoribacter splanchnicus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides uniformis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides xylanisolvens,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Tannerellaceae|g__Parabacteroides|s__Parabacteroides merdae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides ovatus,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides caccae,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides intestinalis,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes putredinis,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Clostridiaceae|g__Clostridium|s__Clostridium sp. AM22-11AC,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Blautia|s__Blautia faecis,k__Bacteria|p__Thermodesulfobacteriota|c__Desulfovibrionia|o__Desulfovibrionales|f__Desulfovibrionaceae|g__Bilophila|s__Bilophila wadsworthia,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes finegoldii,k__Bacteria|p__Bacteroidota|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes onderdonkii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Fusicatenibacter|s__Fusicatenibacter saccharivorans,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Eubacteriales|f__Oscillospiraceae|g__Flavonifractor|s__Flavonifractor plautii,k__Bacteria|k__Pseudomonadati|p__Pseudomonadota|c__Gammaproteobacteria|o__Enterobacterales|f__Enterobacteriaceae|g__Citrobacter|s__Citrobacter freundii,k__Bacteria|k__Bacillati|p__Bacillota|c__Clostridia|o__Lachnospirales|f__Lachnospiraceae|g__Mediterraneibacter|s__[Ruminococcus] torques,k__Bacteria|k__Bacillati|p__Bacillota|c__Negativicutes|o__Acidaminococcales|f__Acidaminococcaceae|g__Phascolarctobacterium|s__Phascolarctobacterium faecium",2|976|200643|171549|815|909656|821;2|976|200643|171549|2005525|375288|823;2|976|200643|171549|815|816|818;2|976|200643|171549|171550|239759|328814;2|976|200643|171549|1853231|283168|28118;2|976|200643|171549|815|816|820;2|976|200643|171549|815|816|371601;2|976|200643|171549|2005525|375288|46503;2|976|200643|171549|815|816|28116;2|976|200643|171549|815|816|47678;2|976|200643|171549|815|816|338188;2|976|200643|171549|815|816|329854;2|976|200643|171549|171550|239759|28117;2|1783272|1239|186801|186802|31979|1485|2293024;2|1783272|1239|186801|3085636|186803|572511|871665;2|200940|3031449|213115|194924|35832|35833;2|976|200643|171549|171550|239759|214856;2|976|200643|171549|171550|239759|328813;2|1783272|1239|186801|3085636|186803|1407607|1150298;2|1783272|1239|186801|186802|216572|946234|292800;2|3379134|1224|1236|91347|543|544|546;2|1783272|1239|186801|3085636|186803|2316020|33039;2|1783272|1239|909932|1843488|909930|33024|33025,Complete,NA