From 16029065cad76fc3d53115de0357bfcdd231b2ec Mon Sep 17 00:00:00 2001 From: Alex Kanitz Date: Wed, 31 Jan 2024 18:50:51 +0100 Subject: [PATCH] fixup --- zarp/plugins/sample_processors/htsinfer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/zarp/plugins/sample_processors/htsinfer.py b/zarp/plugins/sample_processors/htsinfer.py index 514f8d1..714ca3e 100644 --- a/zarp/plugins/sample_processors/htsinfer.py +++ b/zarp/plugins/sample_processors/htsinfer.py @@ -64,7 +64,7 @@ def process( # pylint: disable=arguments-differ LOGGER.debug(f"Command: {cmd}") executor.run(cmd=cmd) records_new = stp.read( - path=content.samples_out, + path=Path(content.samples_out), mapping=map_zarp_to_model, ) return records_new