Add all collection pages and tweak display (#11)

* Update and rename data_management-collection.md to data_sharing.md

* Create data_collection.md

* Create data_reuse

* Create Metagenomics.md

* Rename data_reuse to data_reuse.md

* Create data_analysis.md

* Create metabolomics.md

* Create data_planning.md

* Create genomics.md

* Update main.yml

* Update resource-table-all.html

* Update main.yml

* Update main.yml

* Update index.md

.github/workflows/update_library.yml

@@ -2,9 +2,9 @@
 name: Update library
 
 on:
-  push:
-  pull_request:
-    branches: [ main, master ]
+  #push:
+  #pull_request:
+    #branches: [ main, master ]
   workflow_dispatch:
 
 jobs:

_data/sidebars/main.yml

@@ -3,12 +3,28 @@ subitems:
     url: /index
   - title: All resources
     url: /resources
-  - title: Collections by topic
+  - title: Collections
     subitems:
+      - title: Data management
+        subitems:
+          - title: Data analysis
+            url: /data-analysis
+          - title: Data collection
+            url: /data-collection
+          - title: Data planning
+            url: /data-planning
+          - title: Data reuse
+            url: /data-reuse
+          - title: Data sharing
+            url: /data-sharing
+      - title: Genomics
+        url: /genomics
+      - title: Metabolomics
+        url: /metabolomics
+      - title: Metagenomics
+        url: /Metagenomics
       - title: Proteomics
         url: /proteomics-collection
-      - title: Data management
-        url: /data_management-collection
   - title: Contact us
     url: /contact-us
   - title: Contributors

_includes/resource-table-all.html

@@ -16,7 +16,7 @@
                     </a>{%- endif %}
                 </th>
                 <th>Description</th>
-                <th>Topic(s)</th>
+                <th>Collection(s)</th>
                 <th>Provider</th>
             </tr>
         </thead>

index.md

@@ -19,7 +19,7 @@ The training materials are sorted into collections by broad topic - eg. training
 
 The following collections are available:
 
-{% include section-navigation-tiles.html col = "1" type="Collection"%}
+{% include section-navigation-tiles.html col = "3" type="Collection"%}
 
 
 ## Acknowledgements

pages/Metagenomics.md

@@ -0,0 +1,8 @@
+---
+title: Metagenomics
+type: Collection
+page_id: metagenomics
+contributors: 
+description: This page includes all Learning Library content related to metagenomics
+affiliations: 
+---

pages/data_analysis.md

@@ -0,0 +1,8 @@
+---
+title: Data analysis
+type: Collection
+page_id: data_analysis
+contributors: 
+description: This page includes all Learning Library content related to data analysis
+affiliations: 
+---

pages/data_collection.md

@@ -0,0 +1,8 @@
+---
+title: Data collection
+type: Collection
+page_id: data_collection
+contributors: 
+description: This page includes all Learning Library content related to data collection
+affiliations: 
+---

pages/data_planning.md

@@ -0,0 +1,8 @@
+---
+title: Data planning
+type: Collection
+page_id: data_planning
+contributors: 
+description: This page includes all Learning Library content related to data planning
+affiliations: 
+---

pages/data_reuse.md

@@ -0,0 +1,8 @@
+---
+title: Data reuse
+type: Collection
+page_id: data_reuse
+contributors: 
+description: This page includes all Learning Library content related to data reuse
+affiliations: 
+---

pages/data_management-collection.md → pages/data_sharing.md

@@ -1,9 +1,9 @@
 ---
-title: Data management
+title: Data sharing
 type: Collection
-page_id: data_management
+page_id: data_sharing
 contributors: 
-description: This page includes all Learning Library content related to data management
+description: This page includes all Learning Library content related to data sharing
 affiliations: 
 ---
 

pages/genomics.md

@@ -0,0 +1,8 @@
+---
+title: Genomics
+type: Collection
+page_id: genomics
+contributors: 
+description: This page includes all Learning Library content related to genomics
+affiliations: 
+---

pages/metabolomics.md

@@ -0,0 +1,8 @@
+---
+title: Metabolomics
+type: Collection
+page_id: metabolomics
+contributors: 
+description: This page includes all Learning Library content related to metabolomics
+affiliations: 
+---