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Bring main to match dev #13

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Dec 2, 2024
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2c395ba
Add all collection pages and tweak display (#11)
PatCapon39 May 6, 2024
0c5805b
Update index.md
PatCapon39 May 6, 2024
e42d5a3
Update resource-table-all.html to include format column
PatCapon39 May 6, 2024
1a0f073
Update resource-table-all.html to remove rogue td
PatCapon39 May 6, 2024
7b9403e
Update resources.md
PatCapon39 May 6, 2024
c219e2b
Update index.md
PatCapon39 May 6, 2024
070cf66
Update index.md
PatCapon39 May 6, 2024
0b2539e
Update index.md
PatCapon39 May 6, 2024
a2a1c74
Update main.yml
PatCapon39 May 6, 2024
4200a25
Update index.md
PatCapon39 May 7, 2024
943ce1c
Update index.md
PatCapon39 May 7, 2024
1caeda5
Update _config.yml to 3.0.0 ETT
PatCapon39 May 7, 2024
675fa76
Revert _config.yml to ETT 2.5.0
PatCapon39 May 7, 2024
1649ef0
Update resource-table-all.html to remove if linked_tool loop
PatCapon39 May 7, 2024
a6267ec
Merge numerous changes from most recent co-working session (#12)
PatCapon39 May 28, 2024
38cb639
Update index.md with beta callout
PatCapon39 Jun 12, 2024
1dc2f73
Update data_analysis.md
PatCapon39 Jun 12, 2024
067c8c1
Remove i icon and remove collections column
PatCapon39 Jun 25, 2024
5fb0e19
Add code for nav tile font size
PatCapon39 Jun 25, 2024
67825a6
Add topics column ingest
PatCapon39 Jun 25, 2024
09fc141
Add topics column to table
PatCapon39 Jun 25, 2024
616d87d
Remove excess collections
PatCapon39 Jun 25, 2024
b61caa3
Update data_analysis.md to Topic type
PatCapon39 Jun 25, 2024
32571db
Update data_collection.md to Topic type
PatCapon39 Jun 25, 2024
1120c18
Update data_planning.md to Topic type
PatCapon39 Jun 25, 2024
6b5ab38
Update data_reuse.md to Topic type
PatCapon39 Jun 25, 2024
6286ab6
Update data_sharing.md to Topic type
PatCapon39 Jun 25, 2024
a425096
Update genomics.md to Topic type
PatCapon39 Jun 25, 2024
1ebd144
Update metabolomics.md to Topic type
PatCapon39 Jun 25, 2024
8632e27
Update to Topic type and rename proteomics-collection.md to proteomi…
PatCapon39 Jun 25, 2024
11d70cf
Create data_management.md
PatCapon39 Jun 25, 2024
dd173ca
Add data management to sidebar
PatCapon39 Jun 25, 2024
2999b59
Update Metagenomics.md to Topic type
PatCapon39 Jun 25, 2024
eb322bd
update library
actions-user Jun 25, 2024
e53f5ba
Update _config.yml to ETT 3.0.1
PatCapon39 Jun 25, 2024
05c2b23
Add description to data_management.md
PatCapon39 Jul 4, 2024
61e9ed5
Add header before table data_management.md
PatCapon39 Jul 4, 2024
89eef0f
Update index.md
PatCapon39 Jul 5, 2024
97207d9
Add gtag to _config.yml
PatCapon39 Jul 17, 2024
d9ff266
Fix jekyll environment
PatCapon39 Jul 19, 2024
b457707
Update data_management.md
burkemlou Aug 15, 2024
26a804f
Update index.md
PatCapon39 Oct 25, 2024
60e89cf
Add comments to table conversion python script
PatCapon39 Nov 22, 2024
cb6279a
Merge branch 'Dev' into main
PatCapon39 Dec 2, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/jekyll.yml
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@ jobs:
bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}"
env:
PAGES_REPO_NWO: ${{ github.repository }}
JEKYLL_ENV: ${{ steps.name.outputs.jekyll_env }}
JEKYLL_ENV: production
JEKYLL_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
JEKYLL_BUILD_BRANCH: ${{ github.ref_name }}
JEKYLL_BASE_PATH: ${{ steps.pages.outputs.base_path }}
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10 changes: 6 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,13 +2,15 @@

Welcome to the Australian BioCommons Learning Library!

The Library contains training materials that are sorted into collections based on broad theme. The Library is not intended to be an exhaustive resource for all bioinformatics training materials available.
The Library houses collections of recommended resources to get you started in a new topic. These themed collections are curated by the life sciences community in collaboration with the Australian BioCommons.


## Acknowledgements

This work is supported by the [Australian BioCommons](https://www.biocommons.org.au/). BioCommons is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS) via [Bioplatforms Australia](https://bioplatforms.com/) funding.
These collections were curated by groups of Australian researchers and service providers who were invited to recommend trusted resources in their areas of expertise. BioCommons acknowledges the contributions of the people listed in individual collections and is grateful for their commitment to sharing their knowledge with the research community.

This repository makes use of the ELIXIR toolkit theme: [![theme badge](https://img.shields.io/badge/ELIXIR%20toolkit%20theme-jekyll-blue?color=0d6efd)](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
This work is supported by [Australian BioCommons](https://www.biocommons.org.au/). BioCommons is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS) via [Bioplatforms Australia](https://bioplatforms.com/) funding.

This template is based on the [ELIXIR Toolkit Theme example](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme-example).

The Learning Library makes use of the [ELIXIR toolkit theme](https://github.com/ELIXIR-Belgium/elixir-toolkit-theme)
{% include image.html file="elixir-toolkit-theme_logo.svg" alt="Elixir Toolkit Theme logo" max-width="15em" %}
5 changes: 4 additions & 1 deletion _config.yml
Original file line number Diff line number Diff line change
@@ -1,13 +1,16 @@
title: Learning Library
# This appears in the html browser tab for the site title (seen mostly by search engines, not users)

gtag: G-T8GWK081T9
# Adds BioCommons technical documentation analytics tag

topnav_title: Learning Library
# Optional: this appears on the top navigation bar next to the main_logo.svg icon

description: ""
# Metadata description of the website

remote_theme: ELIXIR-Belgium/elixir-toolkit-theme@2.3.0
remote_theme: ELIXIR-Belgium/[email protected].1

theme_variables:
# biocommons blue
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10 changes: 4 additions & 6 deletions _data/CONTRIBUTORS.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9,33 +9,31 @@
### add maintainers/contributors below and use their name in the contributors metadata section on each page they have contributed towards ###
#############################################################################################################################################

# an example contributor is included below
# example roles include "lead", "first-author", "author", "editor", "workflow-tester"

Johan Gustafsson:
git: supernord
email: [email protected]
orcid: 0000-0002-2977-5032
role: author
role: Development
affiliation: Australian BioCommons

Patrick Capon:
git: PatCapon39
email: [email protected]
orcid: 0000-0002-7396-5757
role: author
role: Development
affiliation: Australian BioCommons

Farah Zaib Khan:
git: FarahZKhan
email: [email protected]
orcid: 0000-0002-6337-3037
role: author
role: Development
affiliation: Australian BioCommons

Melissa Burke:
git: burkemlou
email: [email protected]
orcid: 0000-0002-5571-8664
role: author
role: Development
affiliation: Australian BioCommons
24 changes: 4 additions & 20 deletions _data/sidebars/main.yml
Original file line number Diff line number Diff line change
@@ -1,30 +1,14 @@
subitems:
- title: About
- title: Home
url: /index
- title: All resources
url: /resources
- title: Collections
subitems:
- title: Data management
subitems:
- title: Data analysis
url: /data-analysis
- title: Data collection
url: /data-collection
- title: Data planning
url: /data-planning
- title: Data reuse
url: /data-reuse
- title: Data sharing
url: /data-sharing
- title: Genomics
url: /genomics
- title: Metabolomics
url: /metabolomics
- title: Metagenomics
url: /Metagenomics
- title: Proteomics
url: /proteomics-collection
url: /data_management
- title: About
url: /about
- title: Contact us
url: /contact-us
- title: Contributors
Expand Down
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