docker msodbcsql fix #305
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: check smoke tests | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| smoke_tests: | |
| runs-on: ubuntu-latest | |
| services: | |
| db: | |
| image: postgres:17 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: pw | |
| ports: | |
| - 5432:5432 | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build RecordLinker Docker Image | |
| run: | | |
| docker build -t rl-service-image . | |
| - name: Start RecordLinker Service and Run Smoke Tests | |
| run: | | |
| # Start Record Linker Service | |
| docker run -d --name rl-service \ | |
| --network="host" \ | |
| -e DB_URI="postgresql+psycopg2://postgres:pw@localhost:5432/postgres" \ | |
| -p 8080:8080 \ | |
| rl-service-image | |
| # Wait for the RL Service to be healthy | |
| TRIES=5 | |
| COUNT=0 | |
| until curl -s http://localhost:8080/ | grep "OK"; do | |
| echo "Waiting for RL Service to become healthy... Attempt $((COUNT+1)) of $TRIES" | |
| sleep 5 | |
| COUNT=$((COUNT+1)) | |
| if [ "$COUNT" -ge "$TRIES" ]; then | |
| echo "RL Service did not become healthy in time." | |
| exit 1 | |
| fi | |
| done | |
| # Run smoke tests and print the response | |
| JSON_BODY_1='{"record": {"birth_date": "2053-11-07", "sex": "M", "identifiers":[{"value": "123456789", "type": "MR"}], "name":[{"family":"Shepard", "given":["John"]}]}}' | |
| JSON_BODY_2='{"algorithm": "dibbs-enhanced", "record": {"birth_date": "2000-12-06", "sex": "M", "identifiers":[{"value": "9876543210", "type": "MR"}], "name":[{"family":"Smith", "given":["William"]}]}}' | |
| #basic tests | |
| RESPONSE_1=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_1" | |
| echo "$RESPONSE_1" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_1" | jq -r '.person_reference_id') | |
| RESPONSE_2=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_1" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_2" | |
| echo "$RESPONSE_2" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_2" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #enhanced tests | |
| RESPONSE_3=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_3" | |
| echo "$RESPONSE_3" | jq -e '.prediction == "no_match"' | |
| PERSON_REFERENCE_ID=$(echo "$RESPONSE_3" | jq -r '.person_reference_id') | |
| RESPONSE_4=$(curl -s -X POST http://localhost:8080/link \ | |
| -d "$JSON_BODY_2" \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_4" | |
| echo "$RESPONSE_4" | jq -e '.prediction == "match"' | |
| echo "$RESPONSE_4" | jq -e --arg id "$PERSON_REFERENCE_ID" '.person_reference_id == $id' | |
| #invalid tests | |
| RESPONSE_5=$(curl -s -X POST http://localhost:8080/link \ | |
| -d '{"algorithm": "invalid", "record": {}}' \ | |
| -H "Content-Type: application/json") | |
| echo "Response: $RESPONSE_5" | |
| echo "$RESPONSE_5" | grep -q "No algorithm found" |