R-CMD-check #20

	name: R-CMD-check

	on:
	workflow_dispatch:

	jobs:
	R-CMD-check:
	runs-on: ubuntu-latest

	# env:
	# RENV_CONFIG_PAK_ENABLED: true
	# with above uncommented, the workflow fails with the following error:
	# Error in remote(function(...) get("pkg_install_make_plan", asNamespace("pak"))(...),

	steps:
	- uses: actions/checkout@v4

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libgit2-dev libsqliteodbc

	- name: Create custom odbcinst.ini in a user-accessible directory
	run: \|
	echo "[SQLite]" >> $HOME/odbcinst.ini
	echo "Driver=/usr/lib/x86_64-linux-gnu/odbc/libsqlite3odbc.so" >> $HOME/odbcinst.ini

	- uses: r-lib/actions/setup-pandoc@v2

	- name: Install R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: "4.3.3"
	use-public-rspm: true

	- name: Install dependencies
	uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 1
	working-directory: phenoRankeR
	env:
	RENV_CONFIG_REPOS_OVERRIDE: ${{ env.RSPM }}

	- uses: r-lib/actions/check-r-package@v2
	with:
	upload-snapshots: true
	working-directory: phenoRankeR
	error-on: '"error"'
	env:
	ODBCSYSINI: /home/runner
	DB_DRIVER: SQLite
	DB_NAME: ":memory:"

	# - name: Build package
	# run: R CMD build phenoRankeR

	# - name: Release package
	# uses: softprops/action-gh-release@v2
	# with:
	# files: phenoRankeR_*.tar.gz
	# prerelease: true

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