upgraded R to 4.4.1

CNAG-Biomedical-Informatics · Aug 11, 2024 · a17fa93 · a17fa93
1 parent 56fda02
commit a17fa93
Show file tree

Hide file tree

Showing 7 changed files with 6 additions and 6 deletions.
diff --git a/.github/workflows/R-CMD-check.yml b/.github/workflows/R-CMD-check.yml
@@ -30,7 +30,7 @@ jobs:
       - name: Install R
         uses: r-lib/actions/setup-r@v2
         with:
-          r-version: "4.4.0"
+          r-version: "4.4.1"
           use-public-rspm: true
 
       - name: Install R packages

diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml
@@ -32,7 +32,7 @@ jobs:
       - name: Install R
         uses: r-lib/actions/setup-r@v2
         with:
-          r-version: "4.4.0"
+          r-version: "4.4.1"
           use-public-rspm: true
 
       - name: Install R packages

diff --git a/phenoRankeR/deploy/Dockerfile b/phenoRankeR/deploy/Dockerfile
@@ -1,11 +1,11 @@
-FROM manuelrueda/pheno-ranker:0.05 as base
+FROM manuelrueda/pheno-ranker:0.10 as base
 
 WORKDIR /usr/share/pheno-ranker
 
 FROM base as builder
 
 ENV RENV_CONFIG_PAK_ENABLED=TRUE
-ENV R_VERSION=4.3.3
+ENV R_VERSION=4.4.1
 ENV PhenoRankeR_VERSION=0.0.0.9017
 ENV PPM_URL=packagemanager.posit.co/cran/__linux__/bullseye/latest
 

diff --git a/phenoRankeR/deploy/phenoRankeR_0.0.0.9016.tar.gz b/phenoRankeR/deploy/phenoRankeR_0.0.0.9016.tar.gz
diff --git a/phenoRankeR/deploy/phenoRankeR_0.0.0.9017.tar.gz b/phenoRankeR/deploy/phenoRankeR_0.0.0.9017.tar.gz
diff --git a/phenoRankeR/renv copy.lock → phenoRankeR/deploy/renv.lock b/phenoRankeR/renv copy.lock → phenoRankeR/deploy/renv.lock
@@ -1,6 +1,6 @@
 {
   "R": {
-    "Version": "4.4.0",
+    "Version": "4.4.1",
     "Repositories": [
       {
         "Name": "BioCsoft",

diff --git a/phenoRankeR/renv/activate.R b/phenoRankeR/renv/activate.R
@@ -648,7 +648,7 @@ local({
 
     # if the user has requested an automatic prefix, generate it
     auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA)
-    if (is.na(auto) && getRversion() >= "4.4.0")
+    if (is.na(auto) && getRversion() >= "4.4.1")
       auto <- "TRUE"
 
     if (auto %in% c("TRUE", "True", "true", "1"))