A Repository for Functional Analyses of E coli Genomes on Desk
To map mutations to functional regions
$python edish.py
(Optional)
Enrichments analyses files can be mapped mutation files for summary of all the mutations which overlap the functional regions and their GO enrichments. (PS: for our analyses, we created enrichments with string db (http://string-db.org/))
import edish
from edish import go
go("enrichment.txt", "ecoli_id.txt","mutation.txt")
Ahmed Arslan