Merge pull request #67 from ComparativeGenomicsToolkit/update-hal · ComparativeGenomicsToolkit/hal2vg@42eb1a5

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Merge pull request #67 from ComparativeGenomicsToolkit/update-hal

update to latest hal

glennhickey authored Jul 18, 2024

2 parents ba02c6c + c22c649 commit 42eb1a5

+53 −26		README.md
+16 −6		api/hdf5_impl/hdf5BottomSegment.cpp
+20 −16		api/hdf5_impl/hdf5Genome.cpp
+222 −170		blockViz/impl/halBlockViz.cpp
+34 −72		liftover/impl/halBlockMapper.cpp
+0 −1		liftover/inc/halBlockMapper.h
+4 −3		maf/Makefile
+5 −0		maf/hal2mafMP.py
+1 −1		maf/impl/halMafExport.cpp
+69 −14		maf/tests/expected/hal2mafSeqPartTest.maf
+19 −8		modify/halAppendSubtree.cpp
+123 −0		stats/halcoverage-table.py
+48 −14		stats/impl/halCoverage.cpp