hal2vg 1.0.15 2021-09-03

hal2vg 1.0.15 is available in the following forms:

• Static Linux Binary: hal2vg (Don't forget to mark it executable: chmod +x hal2vg); also clip-vg, halRemoveDupes, halMergeChroms and halUnclip
• Source Tarball: hal2vg-v1.0.15.tar.gz
  Install instructions in README.md

WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.

Release notes

Adds halUnclip to insert centromeres (or any sequence chopped out using cactus-preprocess) back into the hal file from a given set of fasta files. Alignment blocks are unchanged, but sequences with _sub_x_y suffixes get glued back together and renamed.