hal2vg 1.0.17 2022-04-12

hal2vg 1.0.17 is available in the following forms:

• Static Linux Binary: hal2vg (Don't forget to mark it executable: chmod +x hal2vg); also clip-vg, halRemoveDupes, halMergeChroms, halUnclip and filter-paf-deletions
• Source Tarball: hal2vg-v1.0.17.tar.gz
  Install instructions in README.md

WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.

Release notes

• Fix numerous bugs in filter-paf-deletions that prevented it from effectively doing its job
• Add -o option to clip-vg to report clipped regions in a BED file
• Add -a option to clip-vg to consider regions unaligned if they don't align to given prefix