hal2vg 1.0.8 2021-03-08

hal2vg 1.0.8 is available in the following forms:

• Static Linux Binary: hal2vg (Don't forget to mark it executable: chmod +x hal2vg); also clip-vg and halRemoveDupes
• Source Tarball: hal2vg-v1.0.8.tar.gz
  Install instructions in README.md

WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.

Release notes

clip-vg generalized to remove unaligned gaps (-u) without needing a bed file. Also, when a reference prefix is given (-e) it will make sure all steps in reference paths are in forward orientation (to be compatible with rGFA). Also, when a reference prefix is given, connected components that are not anchored to any reference paths are cut by default (keep them with -n)