hal2vg 1.1.4 2023-08-02

hal2vg 1.1.4 is available in the following forms:

• Static Linux Binary: hal2vg (Don't forget to mark it executable: chmod +x hal2vg); also clip-vg, halRemoveDupes, halMergeChroms, halUnclip,filter-paf-deletions count-vg-hap-cov
• Source Tarball: hal2vg-v1.1.4.tar.gz
  Install instructions in README.md

WARNING: do not use the github automatically generated source files (Source code (zip) or Source code (tar.gz)), these are not correct.

Release notes

• Make sure reference paths without haplotype information get HAPLOTYPE=0 instead of HAPLOTYPE=NO_HAPLOTYPE. This fixes compatiblity with vg 1.50.0 which is more strict about these things.