add missing mesh: prefixes for CTD

EBISPOT · Nov 4, 2024 · c375489 · c375489
1 parent 3d205df
commit c375489
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/configs/datasource_configs/ctd.yaml b/configs/datasource_configs/ctd.yaml
@@ -16,6 +16,7 @@ ingests:
          --tsv-columns grebi:name,ChemicalID,CasRN,GeneSymbol,GeneID,GeneForms,Organism,OrganismID,Interaction,InteractionActions,PubMedIDs
       | grebi_transform_jsonl 
           --json-inject-key-prefix ctd:
+          --json-inject-value-prefix ChemicalID:mesh:
           --json-inject-value-prefix GeneID:ncbigene:
           --json-inject-value-prefix OrganismID:ncbitaxon:
           --json-inject-value-prefix PubMedIDs:pmid:
@@ -29,6 +30,7 @@ ingests:
          --tsv-array-delimiter "|"
          --tsv-columns ChemicalName,ChemicalID,CasRN,Ontology,GOTermName,GOTermID,HighestGOLevel,PValue,CorrectedPValue,TargetMatchQty,TargetTotalQty,BackgroundMatchQty,BackgroundTotalQty
       | grebi_transform_jsonl 
+          --json-inject-value-prefix ChemicalID:mesh:
           --json-inject-key-prefix ctd:
       | grebi_nodes2edges
           --from-field ctd:ChemicalID