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Update Preparing-Reference-Files.mdx
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jiyue1214 authored Nov 4, 2024
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Expand Up @@ -34,7 +34,7 @@ If you prefer to use your own VCF files as a reference, we recommend chunking yo
For example, to use the Ensembl release 109, run the following command:

``` bash
nextflow run EBISPOT/gwas-sumstats-harmoniser \
nextflow run EBISPOT/gwas-sumstats-harmoniser -r $version \
--reference \
--ref 'full_path_to_save_reference' \
--remote_vcf_location 'ftp://ftp.ensembl.org/pub/release-109/variation/vcf/homo_sapiens/' \
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