Ref NOAA-EMC#32

Add runWcoss.sh script, lump all plots into single job.

scripts/exobsmon_plot.sh

@@ -26,9 +26,9 @@ fi
 ${APRUN_PY} ${USHobsmon}/splitPlotYaml.py -i ${plot_yaml} -c ${chan_yaml}
 
 #--------------------------------------------------------------
-# Submit OM_sat_plots job if split yields any sat_*.yaml files
+# Submit OM_plots job if split yields any *.yaml files
 #
-if compgen -G "${DATA}/sat_*.yaml" > /dev/null; then
+if compgen -G "${DATA}/*.yaml" > /dev/null; then
 
    jobname="OM_plot_all"
    export logfile="${OM_LOGS}/${MODEL}/OM_plot.log"
@@ -51,14 +51,15 @@ if compgen -G "${DATA}/sat_*.yaml" > /dev/null; then
    done 
 
 
-   if compgen -G "${DATA}/sat*.yaml" > /dev/null; then
+   if (( ${ctr} > 0 )); then
       case ${MACHINE_ID} in
          hera)
 	    ${SUB} --account ${ACCOUNT}  --ntasks=1 --mem=80000M --time=0:50:00 \
 	           -J ${jobname} --partition service -o ${logfile} ${cmdfile}
          ;;
 
 	 wcoss2)  
+            chmod 775 ${cmdfile}
             mem=$((4*${ctr})) 
             echo "submitting ${jobname} on wcoss2, ctr = $ctr, mem = $mem, cmdfile = ${cmdfile}"
 	    cp ${USHobsmon}/runWcoss.sh .

ush/runWcoss.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+
+st=`date`
+
+module reset
+
+module load libfabric/1.11.0.0.
+module load PrgEnv-intel/8.3.3
+module load craype
+module load cray-pals
+module load git/2.29.0
+module load intel/19.1.3.304
+module load python/3.10.4
+module load ve/evs/1.0
+
+export PATH=${PATH}:/lfs/h2/emc/da/noscrub/edward.safford/eva/opt/bin
+export PYTHONPATH=${PYTHONPATH}:/lfs/h2/emc/da/noscrub/edward.safford/eva/opt/
+
+if [ ! -z ${PBS_O_WORKDIR} ]; then cd ${PBS_O_WORKDIR}; fi
+
+./${cmdfile}
+
+end=`date`
+echo "start: ${st}"
+echo "end:   ${end}"