concluding merge

EnvironmentOntology · May 12, 2021 · 84a73a7 · 84a73a7
2 parents 24fb2f4 + 523422f
commit 84a73a7
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diff --git a/src/envo/Makefile b/src/envo/Makefile
@@ -541,7 +541,7 @@ all_modules_obo: $(patsubst %, modules/%.obo, $(MODS))
 
 modules/%.owl: modules/%.csv patterns/%.yaml curie_map.yaml 
 	@perl -pe 's/\r\n/\n/' $< > $<.tmp && mv $<.tmp $< # replace crlf with lf
-	dosdp-tools --table-format=csv --template=./patterns/$*.yaml --outfile=modules/$*.tmp.owl --obo-prefixes=true generate --infile=modules/$*.csv
+	dosdp-tools generate --table-format=csv --template=./patterns/$*.yaml --outfile=modules/$*.tmp.owl --obo-prefixes=true --infile=modules/$*.csv
 	$(ROBOT) annotate --input modules/$*.tmp.owl -O http://purl.obolibrary.org/obo/envo/modules/$*.owl --output modules/$*.owl && rm modules/$*.tmp.owl
 
 modules/%.obo: modules/%.owl