revert for now

KosinskiLab · Oct 30, 2024 · a282ff8 · a282ff8
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commit a282ff8
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diff --git a/.github/workflows/github_actions.yml b/.github/workflows/github_actions.yml
@@ -51,6 +51,8 @@ jobs:
           eval "$(conda shell.bash hook)"
           conda activate AlphaPulldown
           pip install -e .
+          pip install -e ColabFold --no-deps
+          pip install -e alphafold --no-deps
           pip install -U "jax[cuda12]"
           # export PYTHONPATH=$PWD/AlphaLink2:$PYTHONPATH
           # install dependencies for AlphaLink backend

diff --git a/docker/pulldown.dockerfile b/docker/pulldown.dockerfile
@@ -50,6 +50,8 @@ RUN ssh-keyscan github.com >> /root/.ssh/known_hosts
 RUN --mount=type=ssh git clone --recurse-submodules [email protected]:KosinskiLab/AlphaPulldown.git
 WORKDIR AlphaPulldown
 RUN pip3 install .
+RUN pip3 install -e ColabFold --no-deps
+RUN pip3 install -e alphafold --no-deps
 
 RUN pip3 install --upgrade pip --no-cache-dir \
     && pip3 install --upgrade --no-cache-dir \