updated config

config/config_test.yaml

@@ -1,5 +1,20 @@
 # config file for test data
 
+# Set memory and threads for high demanding rules
+high:
+  mem_mb: 32000 # memory in MB
+  t: 4 # number of threads
+
+# Set memory and threads for medium demanding rules
+medium:
+  mem_mb: 8000 # memory in MB
+  t: 4 # number of threads
+
+# Set memory and threads for low demanding rules
+low:
+  mem_mb: 1000 # memory in MB
+  t: 4 # number of threads
+
 # Path to hifi reads
 hifi_path: "resources/raw_hifi/"
 
@@ -55,14 +70,14 @@ minimap2:
 hifiasm:
   t: 4  # number of threads
   mem_mb: 1000 # memory in MB
+  phased_assembly: False # set to true if you want to obtain a phased assembly
   optional_params: 
-    phased_assembly: False # set to true if you want to obtain a phased assembly
     "-f": "0" # used for small datasets
     "-l": "" # purge level. 0: no purging; 1: light; 2/3: aggressive [0 for trio; 3 for unzip]
     "--ul": "" # use this if you have also ont data you want to integrate in your assembly
 
 #Set this to False if you want to skip the fcsgx step:
-include_fcsgx: True #inlcude this rule only if you have preiously downloaded the database (recommended to run fcsgx only on a HPC. It requires around 500 GB of space on your disk and a large RAM)
+include_fcsgx: False #inlcude this rule only if you have preiously downloaded the database (recommended to run fcsgx only on a HPC. It requires around 500 GB of space on your disk and a large RAM)
 
 # Customisable parameters for fcsgx
 fcsgx: