More fixes in response to GHA failures

LieberInstitute · Jul 19, 2024 · bd02bcc · bd02bcc
1 parent ad59387
commit bd02bcc
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Showing 4 changed files with 6 additions and 6 deletions.
diff --git a/R/add_array_coords.R b/R/add_array_coords.R
@@ -86,8 +86,8 @@
 #' 
 #' #    Many columns related to spatial coordinates were added
 #' added_cols_regex = "^(array|pxl)_(row|col)(_in_fullres)?_(transformed|original|rounded)$"
-#' colnames(SpatialExperiment::colData(spe_new))[
-#'     grep(added_cols_regex, colnames(SpatialExperiment::colData(spe_new)))
+#' colnames(SummarizedExperiment::colData(spe_new))[
+#'     grep(added_cols_regex, colnames(SummarizedExperiment::colData(spe_new)))
 #' ]
 #' 
 #' #    array_row' and 'array_col' were overwritten with their transformed

diff --git a/R/add_overlap_info.R b/R/add_overlap_info.R
@@ -29,7 +29,7 @@
 #' 
 #' #    Find the mean of the 'sum_umi' metric by capture area to understand
 #' #    which capture areas will be excluded in regions of overlap
-#' SpatialExperiment::colData(spe) |>
+#' SummarizedExperiment::colData(spe) |>
 #'     dplyr::as_tibble() |>
 #'     dplyr::group_by(capture_area) |>
 #'     dplyr::summarize(mean_sum_umi = mean(sum_umi))

diff --git a/man/add_array_coords.Rd b/man/add_array_coords.Rd
diff --git a/man/add_overlap_info.Rd b/man/add_overlap_info.Rd