nametools

Old, mostly obsoleted by filteredpush/sci_name_qc library for working with scientific names data.

Build with

mvn clean package

Run with

$ java -jar target/nameTools-0.1.6-jar-with-dependencies.jar -h
usage: CheckNames version 0.1.6 -action <arg> [-help] [-infile <arg>]
       [-service <arg>] [-taxon <arg>]
Validate taxon names from a specified source authority or
harvest a snapshot of them from that authority.
Errors are written out to nametools.log.
Harvest output to {gbif|worm}harvest.csv.
 -action <arg>    Action to take, validate or harvest.
 -help            Help message.
 -infile <arg>    File containing taxon names to validate.  Assumes a csv
                  file, first three columns being dbpk, scientificname,
                  authorship, columns after the third are ignored.  Used
                  only in validation.
 -service <arg>   Webservice to invoke, WoRMS, IPNI, IF, ZooBank,
                  WoRMS+ZooBank, GBIF, or COL, default is WoRMS+ZooBank.
                  GBIF uses the GBIF backbone taxonomy, COL uses the
                  annual snapshot of COL in GBIF.  Not all services have
                  both validation and harvest available.
 -taxon <arg>     Taxon to validate or to harvest children of.
Specify -action and -taxon to validate or harvest