added check for pos range

MRCIEU · Jul 25, 2019 · 1cb8a72 · 1cb8a72
1 parent 30b67f1
commit 1cb8a72
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/gwas_results.py b/gwas_results.py
@@ -126,7 +126,8 @@ def read_from_file(
 
             try:
                 pos = int(float(s[pos_field]))  # float is for scientific notation
-            except ValueError as e:
+                assert pos > 0
+            except (ValueError, AssertionError) as e:
                 logging.warning("Skipping {}: {}".format(s, e))
                 continue
 

diff --git a/main.py b/main.py
@@ -12,7 +12,7 @@
 
 
 def main():
-    version = "1.0.0"
+    version = "1.0.1"
 
     parser = argparse.ArgumentParser(description='Map GWAS summary statistics to VCF/BCF')
     parser.add_argument('-v', '--version', action='version', version='%(prog)s {}'.format(version))