Code

Constituent updates#549

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grantfirl merged 188 commits intoNCAR:mainNCAR/ccpp-framework:mainfrom peverwhee:add_const_interfacepeverwhee/ccpp-framework:add_const_interfaceCopy head branch name to clipboardJul 10, 2024

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Commits

Commits on Jul 14, 2022

• Refactor constituent mixing ratio properties

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Commits on Aug 12, 2022

• Avoid RE deprecation warning by moving case fold to state_machine.py

  

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• Fix doctest

  

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Commits on Dec 12, 2022

• Allow '1' to be a valid unit

  

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Commits on Jan 2, 2023

• Added molar_mass (molecular weight) value to constituent property type

  

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Commits on Jan 5, 2023

• initial changes

  

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Commits on Jan 6, 2023

• fixes

  

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Commits on Jan 9, 2023

• address review comments

  

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• hopefully final fixes

  

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Commits on Jan 10, 2023

• Merge pull request NCAR#41 from peverwhee/add_molecular_weight

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Commits on Feb 5, 2023

• initial commit

  

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• fix function name

  

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Commits on Feb 6, 2023

• fix fstring

  

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• fix mistakes in routine names and comments

  

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Commits on Mar 1, 2023

• split up register and initialize

  

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• cleanup

  

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• cleanup

  

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• add temporary hash_table variable to avoid dangling pointer

  

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Commits on Mar 2, 2023

• deallocate hash_table

  

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Commits on Mar 7, 2023

• cleaner way to deallocate hash table in iterator object

  

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Commits on Mar 22, 2023

• change name of const array interfaces

  

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Commits on Apr 10, 2023

• add intialized_in_physics property

  

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Commits on Apr 11, 2023

• better error handling; fix for copy constituent

  

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Commits on Apr 12, 2023

• remove unnecessary use statment

  

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Commits on Apr 19, 2023

• fix unit tests

  

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Commits on May 11, 2023

• revert changes for unit conversion test

  

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Commits on May 22, 2023

• handle constituent edge cases better and differently; revert module variable in hash_table

  

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• fix decimal

  

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Commits on Jun 8, 2023

• Merged changes from new_variables_input

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Commits on Jun 9, 2023

• remove initialized-in-physics constituent from advection test required variable arrays

  

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Commits on Jun 27, 2023

• Initial commit of containerized GitHub actions to run unit tests.

  

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• Fixing typo from previous commit.

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• Fixing typo from previous commit.

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• Addming missing python dependency.

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• Removing incorrect flag from pip install.

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• Replacing incorrect Dockerfile instruction.

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• Returning non-zero if test failures detected.

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Commits on Jun 28, 2023

• Removing test failing due to not being fully implemented yet.

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• Addming missing newlines.

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Commits on Jul 3, 2023

• add default_value to constituent properties object

  

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• Adding testing CI action to pull requests and all branches.

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• Updating workflow name with more accurate description.

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• Renaming capgen unit test workflow file.

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• Fixing typo.

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• Moving capgen Dockerfile into test directory.

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• Adding print statement to test output for reasong for skipping var_action_test.

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Commits on Jul 5, 2023

• Moving tests to running in github container directly.

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• Replacing apt calls with apt-get.

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• Adding sudo to apt-get commands.

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• Updating package names to ubuntu packages.

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• Updating path to cd into.

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• Removing test/Dockerfile as no longer needed.

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• Removing un-needed python dependencies install step.

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• Removing sourcing python venv.

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Commits on Jul 7, 2023

• Filtering CI action to only auto run if in a PR or pushing to the main repo.

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• Testing allowing run of actions manually.

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• Adding proper filter to job to run unit test action manually.

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• Fixing format of workflow_dispatch declaration.

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• Changing ordering of workflow triggers.

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• Adding initial pylint configuration.

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• Removing pylint job to evaluate in a new PR.

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• Merge pull request #2 from mwaxmonsky/test_actions

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Commits on Jul 12, 2023

• add has_default method

  

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• Merge branch 'add_const_interface' of https://github.com/peverwhee/ccpp-framework into add_const_interface

  

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Commits on Jul 14, 2023

• Add 'thermo_active' property to constituent properties DDT.

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• Update CCPP constituent standard names.

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• Fix thermo_active syntax errors caught by unit tests.

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• Add 'thermo_active' property tests to 'advection_test' unit test collection.

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Commits on Jul 18, 2023

• Attempt to add more python versions to python tests.

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• Updating action versions to no longer use deprecated node12.

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• Updating python.yaml to run on demand.

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• Temporarily adding push events back.

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• Updating metadata tests to check updated property name.

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Commits on Jul 26, 2023

• Initial doctest action and associated fixes.

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• Fixing actions file syntax error.

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• Fixing doctest call.

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Commits on Aug 1, 2023

• Fixing shell script syntax error.

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• Removing doctest from main unit test script as no longer needed with new doctest action.

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• Fixing no newline in some files.

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• Removing push events.

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• Initial attempt of removing python 2 code checks.

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Commits on Aug 2, 2023

• Removing python code older than 2.7

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Commits on Aug 3, 2023

• Chaning python unit tests to run in pytest harness.

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• Removing un-needed pylint statements and fixing imports.

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Commits on Aug 4, 2023

• Fixing formatting.

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• Removing python2 style is string check.

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• Update minimum version to 3.7

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• Merge pull request #4 from mwaxmonsky/remove_python_2

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Commits on Aug 7, 2023

• Update .github/workflows/python.yaml

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• Update .github/workflows/python.yaml

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• Update .github/workflows/python.yaml

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• Removing un-needed main function that runs doc test.

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• Removing un-needed main function that runs doctest.

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Commits on Aug 8, 2023

• Adding more python versions to test against.

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• Testing version syntax fix.

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• Testing updated version syntax fix.

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• Fixing version syntax.

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• Reverting version support syntax.

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• Removing pytest from testing of generated fortran script and removing doctest script as no longer usable.

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• Updating pytest.ini to ignore non-unit test files.

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• Adding verbose pytest output.

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• Re-adding unit test main check to unit tests.

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Commits on Aug 9, 2023

• Renaming test script to more appropriate name.

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• removing un-needed python requirements.txt install step.

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• Updating test script name missing from previous commit.

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• Removing requirements.txt as not needed currently.

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Commits on Aug 24, 2023

• Merge pull request #1 from gold2718/add_const_interface

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• Fixing typo

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• fix advection test

  

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• Merge branch 'add_const_interface' into pytest_additions

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• Typo fix.

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• Merge pull request #3 from mwaxmonsky/pytest_additions

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Commits on Aug 25, 2023

• add new host cap interface to check if a variable is already a scheme constituent

  

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• Merge branch 'add_const_interface' of https://github.com/peverwhee/ccpp-framework into add_const_interface

  

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• add testing

  

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• Make capgen unit tests less inter-dependent, and perform some cleanup.

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• Merge remote-tracking branch 'peverwhee/add_const_interface' into const_updates

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Commits on Aug 27, 2023

• Fix variable intent.

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Commits on Aug 28, 2023

• Merge pull request #5 from nusbaume/const_updates

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• resolve merge conflicts

  

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• fix check_errflg call

  

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Commits on Aug 29, 2023

• address reviewer comments

  

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• fix function calls

  

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• Merge pull request #6 from peverwhee/new-interface

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• Set values for error flag and error message in new is_scheme_const subroutine.

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Commits on Aug 30, 2023

• Merge pull request #7 from nusbaume/errflg_fix

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Commits on Sep 6, 2023

• Add new 'set_minimum' method which can change min constituent value

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Commits on Sep 7, 2023

• Add unit tests for new set_minimum method.

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Commits on Sep 20, 2023

• Fixed typos in test_host messages.

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Commits on Sep 25, 2023

• Merge pull request #8 from nusbaume/qmin_setter

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Commits on Sep 27, 2023

• Add new 'water_species' property and associated methods.

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Commits on Sep 29, 2023

• Add 'water_species' property unit tests.

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Commits on Oct 3, 2023

• Fix comments in water species routines.

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Commits on Oct 10, 2023

• Add space between '.not.' and logical to improve readability.

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Commits on Oct 12, 2023

• Merge pull request #9 from nusbaume/water_species_prop

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Commits on Nov 7, 2023

• sort sets before writing to files to ease comparison between runs

  

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• fix attempt to sort list

  

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Commits on Nov 8, 2023

• Merge pull request #10 from peverwhee/sorted_sets

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Commits on Jan 11, 2024

• Add setter methods for molecular weight, and add some additional property checks.

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• Add new unit tests, and fix bugs found during testing.

  nusbaume

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Commits on Jan 12, 2024

• Replace 'molec_weight' with 'molar_mass', as it is likely a more accurate term.

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• Merge pull request #12 from nusbaume/mol_weight_set

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Commits on Feb 5, 2024

• initial commit; metadata table and parsing working

  

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Commits on Feb 9, 2024

• code works; may need cleanup

  

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• fix comment order - CRUCIAL

  

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Commits on Feb 12, 2024

• merge to head of feature/capgen

  

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• Merge branch 'dynamic_constituents' into peverwhee-fork-dynamic-constituents

  

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• clean-up and switch constituents.py to fstrings

  

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Commits on Feb 13, 2024

• expand testing

  

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Commits on Feb 25, 2024

• update register_constituents error handling; misc review requests

  

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Commits on Feb 28, 2024

• add doctests to ccpp_datafile.py

  

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Commits on Mar 1, 2024

• review comments; add in vertical transform bugfix

  

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• Merge pull request #13 from peverwhee/peverwhee-fork-dynamic-constituents

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Commits on Mar 6, 2024

• merge to head of feature/capgen

  

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Commits on Mar 11, 2024

• fix merge

  

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• another merge fix

  

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Commits on Mar 18, 2024

• merge to head of feature/capgen

  

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• Merge remote-tracking branch 'NCAR/main' into add_const_interface

  

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• merge in NCAR/main

  

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• fix merge

  

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• fix test; bring back python.yaml workflow

  

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• code cleanup; review requests; include python3.12 in ci testing

  

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• add script to check fortran vs metadata without a host model

  

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• add check that routine exists in fortran; use module-level dynamic constituents variable in cap rather than provided by host

  

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• fix typo

  

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• allow for skipping of ddt check; skip ddt check from offline script

  

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• handle dimensions for promoted variables

  

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• check for compatibility before adding constituent; add more testing

  

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• update logic to exclude nested subroutines from routine parsing

  

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• update vardictionary doctests and add 3.12 testing

  

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• Merge remote-tracking branch 'NCAR/main' into group-fix

  

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• code cleanup; review requests

  

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• code clean-up; add test for promoted variable with no horiz dimension

  

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• Merge remote-tracking branch 'NCAR/main' into add_const_interface

  

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• merge in optional fortran v metadata checker

  

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• Merge remote-tracking branch 'origin/group-fix' into add_const_interface

  

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• Merge remote-tracking branch 'NCAR/main' into add_const_interface

  

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• address review comments

  

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• fix incorrect subname

  

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• fix indexing

  

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