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Merge pull request #14 from NIGMS/workbench-instance-patch
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updated title of workbench instances section
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RossCampbellNIH2 authored Nov 15, 2024
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Expand Up @@ -15,9 +15,9 @@ This module teaches you how to interact with genomics files using the terminal i

Included here are several submodules or tutorials in the form of Jupyter notebooks. The purpose of these submodules is to help users familiarize themselves with the cloud computing environment in the specific context of working with genomics data and software packages to analyze genomics data. These tutorials accomplish this by going step-by-step introducing users to the cloud environment, the terminal interface, the BASH coding language, genomics file formats, the conda software package manager, and methods for mitigating common coding errors. These lessons build familiarity with the terminal environment and set users up to begin working with their own datasets in the terminal environment. For additional technical details on interfacing with the cloud users should reference [NIH Cloud Lab README](https://github.com/STRIDES/NIHCloudLabGCP).

### Creating a notebook instance
### Creating a Vertex AI Workbench Instance

Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md) to create a new notebook instance in Vertex AI. Follow steps 1-8 and be especially careful to enable idle shutdown as highlighted in step 8. In step 7 in the Machine type tab, select n1-standard-4 from the dropdown box.
Follow the steps highlighted [here](https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateVertexAINotebooks.md) to create a new Workbench instance in Vertex AI. Follow steps 1-8 and be especially careful to enable idle shutdown as highlighted in step 8. In step 7 in the Machine type tab, select n1-standard-4 from the dropdown box.

To use our module, open a new Terminal window from your new notebook instance and clone this repo using `git clone https://github.com/NIGMS/Fundamentals-of-Bioinformatics.git`. Navigate to the directory for this project. You will then see the notebooks in your environment.

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