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Update submodule04_beyond_basic_bash.ipynb
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RossCampbellNIH2 authored Nov 15, 2024
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"\n",
"<div class=\"alert alert-block alert-danger\">\n",
" <i class=\"fa fa-exclamation-circle\" aria-hidden=\"true\"></i>\n",
" <b>Alert: </b> The following steps require that you use the terminal. For instructions on opening a new terminal console within current layout click <a href=\"https://github.com/NIGMS/NIGMS-Sandbox/blob/new_console_doc/docs/HowToCreateNewTerminalConsoleJupyterLab.md\">here</a> \n",
" <b>Alert: </b> The following steps require that you use the terminal. For instructions on opening a new terminal console within current layout click <a href=\"https://github.com/NIGMS/NIGMS-Sandbox/blob/main/docs/HowToCreateNewTerminalConsoleJupyterLab.md\">here</a> \n",
"</div>\n",
"\n",
"Loops are pretty useful, but what if we wanted to make it even simpler to run this code. Maybe we even want to share the program we just wrote with other lab members so that they can execute it on their own FASTQ files. One way to do this would be to write this series of commands into a `Bash script`, that can be executed at the command line, passing the files you would like to be operated on to the script.\n",
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