Github Action: Lint Notebooks

NIGMS · Oct 31, 2024 · ac509de · ac509de
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Showing 11 changed files with 19 additions and 3,325 deletions.
diff --git a/01-RNA-Seq/.ipynb_checkpoints/RNA-seq-checkpoint.ipynb b/01-RNA-Seq/.ipynb_checkpoints/RNA-seq-checkpoint.ipynb
diff --git a/01-RNA-Seq/.ipynb_checkpoints/rnaseq-gcb-checkpoint.config b/01-RNA-Seq/.ipynb_checkpoints/rnaseq-gcb-checkpoint.config
diff --git a/01-RNA-Seq/RNA-seq.ipynb b/01-RNA-Seq/RNA-seq.ipynb
@@ -16,9 +16,7 @@
   {
    "cell_type": "markdown",
    "id": "0d86bb1c-96d9-495a-9382-c380ae075451",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "## <span> Pre-Module Flashcards to Revise the Basics <span>"
    ]
@@ -27,9 +25,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "f0e9ac26-e308-471a-83a4-113f767524b0",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "IRdisplay::display_html('<iframe src = \"../docs/quiz_files/rna-pre_module.html\" width=95% height=600></iframe>')"
@@ -38,9 +34,7 @@
   {
    "cell_type": "markdown",
    "id": "b491749f-1501-40c9-ac0e-188ce48d8935",
-   "metadata": {
-    "tags": []
-   },
+   "metadata": {},
    "source": [
     "## <span>**1. Introduction** <a name=\"IN\"></a> </span>\n",
     "### <span> Central Dogma of Molecular Biology. <span>\n",
@@ -200,10 +194,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "bb2e1f61-eea1-4464-9842-76fabae4c39a",
-   "metadata": {
-    "scrolled": true,
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "system('./nextflow run nf-core/rnaseq -c rnaseq-gcb.config -profile test,gcb', intern=TRUE)"
@@ -294,10 +285,7 @@
    "cell_type": "code",
    "execution_count": null,
    "id": "a5ea70df-98ba-4a69-aeec-2baed34a72fc",
-   "metadata": {
-    "scrolled": true,
-    "tags": []
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "library(DESeq2)\n",
@@ -753,27 +741,7 @@
    ]
   }
  ],
- "metadata": {
-  "environment": {
-   "kernel": "ir",
-   "name": "r-cpu.4-2.m110",
-   "type": "gcloud",
-   "uri": "gcr.io/deeplearning-platform-release/r-cpu.4-2:m110"
-  },
-  "kernelspec": {
-   "display_name": "R",
-   "language": "R",
-   "name": "ir"
-  },
-  "language_info": {
-   "codemirror_mode": "r",
-   "file_extension": ".r",
-   "mimetype": "text/x-r-source",
-   "name": "R",
-   "pygments_lexer": "r",
-   "version": "4.2.3"
-  }
- },
+ "metadata": {},
  "nbformat": 4,
  "nbformat_minor": 5
 }