Merge pull request #155 from sylvinite/master

Added test cores for staging
NationalGenomicsInfrastructure · Oct 11, 2016 · aa70d00 · aa70d00
2 parents 3171697 + 826f5eb
commit aa70d00
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diff --git a/roles/multiqc/templates/multiqc_config.yml.j2 b/roles/multiqc/templates/multiqc_config.yml.j2
@@ -14,7 +14,7 @@ fn_ignore_paths:
     - '*/piper_ngi/04_merged_alignments/*'
 
 #True for production, False for Staging
-{% if "{{ deployment_environment }}" == "production" %}
+{% if deployment_environment == "production" and item.site == "sthlm" %}
 push_statusdb: True
 save_remote: True
 remote_sshkey: '~/.ssh/id_rsa'  # Optional

diff --git a/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2 b/roles/ngi_pipeline/templates/irma_ngi_config.yaml.j2
@@ -14,9 +14,13 @@ environment:
             - {{ proj_root }}/{{ ngi_pipeline_upps_delivery }}/incoming
 # TODO: This QOS flag is probably not used/needed any longer. 
 #       Enable later in the future if required. 
-#slurm:
-#    extra_params:
-#        "--qos": "seqver"
+
+{% if deployment_environment in [ "staging", "devel" ] %}
+slurm:
+     queue: 
+         - devcore
+{% endif %}
+
 piper:
     #sample:
     #    required_autosomal_coverage: 28.4