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@Nevada-Bioinformatics-Center

Nevada Bioinformatics Center

Core Facility at the University of Nevada, Reno
README.md

Nevada Bioinformatics Center

The Nevada Bioinformatics Center thanks NV INBRE and MW CTR-IN, grants from the National Institute of General Medical Sciences (GM103440 and GM104944) of the National Institutes of Health for their support.

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  1. snakemake_rnaseq_combined_workflow snakemake_rnaseq_combined_workflow Public

    Forked from hans-vg/snakemake_rnaseq_combined_workflow

    Snakemake workflow that runs trimmomatic for trimming, and STAR and/or HISAT2 for aligning.

    Python 1

Repositories

Showing 10 of 24 repositories
  • NBC_nextflow_workshop Public

    Nevada Bioinformatics Core - Nextflow Workshop for Beginners

    Nevada-Bioinformatics-Center/NBC_nextflow_workshop’s past year of commit activity
    JavaScript 0 1 0 0 Updated Jan 15, 2025
  • NIGMS-UNR-2024_CloudModule Public

    For development of NIGMS cloud module

    Nevada-Bioinformatics-Center/NIGMS-UNR-2024_CloudModule’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 9, 2025
  • snakemake_rnaseq_combined_workflow Public Forked from hans-vg/snakemake_rnaseq_combined_workflow

    Snakemake workflow that runs trimmomatic for trimming, and STAR and/or HISAT2 for aligning.

    Nevada-Bioinformatics-Center/snakemake_rnaseq_combined_workflow’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Dec 5, 2024
  • pronghorn_snakemake_config Public

    A simple configuration for having snakemake submit jobs to UNRs pronghorn cluster

    Nevada-Bioinformatics-Center/pronghorn_snakemake_config’s past year of commit activity
    0 1 0 0 Updated Nov 27, 2024
  • snakemake_rnaseq_salmon_workflow Public
    Nevada-Bioinformatics-Center/snakemake_rnaseq_salmon_workflow’s past year of commit activity
    Python 0 0 0 0 Updated Oct 23, 2024
  • Nevada-Bioinformatics-Center-snakemake_suppa_diffsplice_workflow Public
    Nevada-Bioinformatics-Center/Nevada-Bioinformatics-Center-snakemake_suppa_diffsplice_workflow’s past year of commit activity
    Python 0 0 0 0 Updated Oct 23, 2024
  • unix_configurations Public

    Directory for unix configurations

    Nevada-Bioinformatics-Center/unix_configurations’s past year of commit activity
    0 0 0 0 Updated Oct 15, 2024
  • snakemake_gbs_sorghum_mapping_workflow Public

    snakemake GBS sorghum mapping pipeline for sorghum data using bowtie2.

    Nevada-Bioinformatics-Center/snakemake_gbs_sorghum_mapping_workflow’s past year of commit activity
    Python 0 0 0 0 Updated Sep 29, 2023
  • snakemake_ssr_workflow_hipstr Public

    A snakemake pipeline to analyze SSR/STR data and call markers in VCF format using HipSTR (https://hipstr-tool.github.io/HipSTR/)

    Nevada-Bioinformatics-Center/snakemake_ssr_workflow_hipstr’s past year of commit activity
    Python 1 0 0 0 Updated Sep 22, 2023
  • Simple Public Forked from wacguy/Simple

    A fork of the simple pipeline, updated to use conda environment instead of using hard coded software versions.

    Nevada-Bioinformatics-Center/Simple’s past year of commit activity
    C 1 11 0 0 Updated Jan 17, 2023
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