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index.html
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<!DOCTYPE HTML>
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<title>Introduction to Bioinformatics Techniques</title>
<h2>- Virtual Workshop Miniseries -</h2>
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<h1>
Introduction to Bioinformatics Techniques
</h1>
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February 2022
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<a href="pdfs/workshop_flyer.pdf" target="_blank">WORKSHOP AGENDA AND REGISTRATION</a>
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<a href="#day1">Day 1</a>
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<a href="#day2">Day 2</a>
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<li>
<a href="#day3">Day 3</a>
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<a href="#contact">Contact</a>
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<a href="#acknowledgements">Thanks To</a>
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<h2 class="major">Day 1 Material, February 4th</h2>
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<h3>Preperation Prior to Workshop</h3>
<a href="pdfs/galaxy_signup_instructions.pdf" target="_blank">Galaxy Sign-up Instructions</a>
</p>
<p>
<h3>Overview of Bioinformatics</h3>
Presented by Dan Bergey and Juli Petereit<br>
<a href="pdfs/Bioinformatics_Intro_Bergey.pdf" target="_blank">Seminar: Bioinformatics Introduction</a>
<br>
<!--<a href="pdfs/Sequencing_Strategies.pdf" target="_blank"></a>-->Resource: Getting into Bioinformatics</a>
</p>
<p>
<h3>Self-Paced: Intro to NCBI</h3>
Prepared by Dan Bergey<br>
<a href="pdfs/NCBI_handson_Bergey.pdf" target="_blank">Tutorial: Intro to NCBI</a>
</p>
<p>
<h3>Hands-on: Identification of new SARS-CoV-2 strains utilizing Galaxy</h3>
Presented by Hans Vasquez-Gross<br>
<a href="pdfs/identification_of_new_covid_strains_on_galaxy.pdf" target="_blank">Customized Tutorial: Identification of new SARS-CoV-2 strains</a><br>
<a href="https://training.galaxyproject.org/training-material/topics/variant-analysis/tutorials/sars-cov-2-variant-discovery/tutorial.html" target="_blank">Full Galaxy Tutorial: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data</a><br>
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<article id="day2">
<h2 class="major">Day 2 Material, February 11th</h2>
<p>
<h3>Preperation Prior to Workshop</h3>
<a href="pdfs/galaxy_signup_instructions.pdf" target="_blank">Galaxy Sign-up Instructions</a>
</p>
<p>
<h3>Microbiome</h3>
Presented by Dan Bergey and Lucas Bishop<br>
<a href="pdfs/Overview of the Gut Microbiota_SPR2022.pdf" target="_blank">Seminar: What’s the deal with the (gut) microbiome?</a>
<br>
<a href="pdfs/tutorial_custom_mothur-galaxy.pdf" target="_blank">Hands-on: How antibiotics kill healthy gut bacteria</a>
</p>
</article>
<article id="day3">
<h2 class="major">Day 3 Material, February 18th</h2>
<p>
<h3>Bioinformatics in Cancer Research</h3>
Presented by Tin Nguyen and Phi Nguyen<br>
<a href="pdfs/Workshop_Cancer_Subtyping_2022.pdf" target="_blank">Seminar: Data Integration and Cancer Subtypling; How to differentiate cancer types and severity</a>
<br>
<a href="pdfs/CPA-Bioinformatics-workshop.pdf" target="_blank">Hands-on: Introduction to CPA software</a>
<br>
<a href="pdfs/Differential-analysis-using-GEO2R-tutorial.pdf" target="_blank">Hands-on: Gaining insights into our genome utilizing CPA</a>
<br>
<a href="pdfs/datasets.xlsx" target="_blank">Test Data: Download Me!</a>
</p>
</article>
<article id="acknowledgements">
<h2 class="major">Acknowledgements</h2>
<p>
<i>This workshop was made possible by a grant from the National Institute of General Medical Sciences (GM103440) from the National Institutes of Health and grants by the National Science Foundation (2001385, 2019609).
<br><br>Special thanks to <b><a href="https://med.unr.edu/inbre" target="_blank">NV INBRE's</a></b> Administrative Core and Data Science Core for Biomedical Research for supporting and organizing this event.</i>
<br><br>
<img src="images/INBRE_logo.png" style="width:50%; height:auto;">
</p>
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<h2 class="major">Contact</h2>
<p>
<b><a href="https://www.unr.edu/bioinformatics" target="_blank">Nevada Bioinformatics Center</a></b>
</p>
<p>
<b><a href="https://www.unr.edu/bioinformatics/contact" target="_blank">NBC Personnel</a></b>
</p>
<p>
<b><a href="https://bioinformatics.cse.unr.edu/home/" target="_blank">Tin Nguyen, PhD</a></b>
</p>
<p>
<b><a href="mailto:[email protected]">Daniel Bergey, PhD</a></b>
</p>
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