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fix key error #94

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merged 2 commits into from
Feb 7, 2024
Merged

fix key error #94

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9745a82
fix key error
alienzj Oct 5, 2022
a3b911f
Merge branch 'master' into fix_keyerror
abuendia Feb 7, 2024
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16 changes: 8 additions & 8 deletions scripts/convert.py
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Original file line number Diff line number Diff line change
Expand Up @@ -78,25 +78,25 @@ def convert_allele(allele, resolution):

# Output: P-group allele
elif resolution == 'p-group':
if allele[:-1] in p_group[i]:
allele = p_group[i][allele[:-1]]
if allele[:-1] in p_group[str(i)]:
allele = p_group[str(i)][allele[:-1]]

elif process_allele(allele[:-1], i - 1) in p_group[i]:
allele = p_group[i][process_allele(allele[:-1], i -1)]
elif process_allele(allele[:-1], i - 1) in p_group[str(i)]:
allele = p_group[str(i)][process_allele(allele[:-1], i -1)]

# Input: ungrouped allele
# Output: G-group allele
elif resolution == 'g-group':
if allele in g_group[i]:
allele = g_group[i][allele]
if allele in g_group[str(i)]:
allele = g_group[str(i)][allele]
elif allele[-1] != 'N':
allele = process_allele(allele,3)

# Input: ungrouped allele
# Output: P-group allele
elif resolution == 'p-group':
if allele in p_group[i]:
allele = p_group[i][allele]
if allele in p_group[str(i)]:
allele = p_group[str(i)][allele]

# Input: ungrouped allele
# Output: reduced resolution, ungrouped allele
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