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Merge pull request #202 from chaselgrove/neurobagel-links
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Fix neurobagel.org links
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chaselgrove authored Jan 8, 2025
2 parents c57221b + 758a282 commit 2644ee2
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6 changes: 3 additions & 3 deletions content/resources/tutorials/pond-lake.md
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Expand Up @@ -42,7 +42,7 @@ sudo usermod -aG root $USER

Mount your NIDM file (nidm.ttl) containing the study data using Neurobagel to create a local ReproPond.

Install the Neurobagel Docker. Please refer to https://neurobagel.org/getting_started/ for full details.
Install the Neurobagel Docker. Please refer to https://neurobagel.org/user_guide/getting_started/ for full details.

Clone the Neurobagel recipes:

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docker compose --profile full_stack down
```

For full details of profiles and environmental variables at https://neurobagel.org/config/. For additional information for maintaining a node refer to https://neurobagel.org/maintaining/.
For full details of profiles and environmental variables at https://neurobagel.org/user_guide/config/. For additional information for maintaining a node refer to https://neurobagel.org/user_guide/maintaining/.

### Step 2: Add local data and metadata to the local node

Refer to [https://neurobagel.org/config/](https://neurobagel.org/config/) Uploading data to the graph store.
Refer to [https://neurobagel.org/user_guide/config/](https://neurobagel.org/user_guide/config/#uploading-data-to-the-graph-store).

The neurobagel/recipes repo contains a helper script scripts/add_data_to_graph.sh for automatically uploading all JSONLD and/or TTL files (i.e., graph-ready data) in a directory to a specific graph database. Below is an example of uploading files from a neurobagel_examples directory and clearing the existing data:

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