fix bug when using only a single annotation

RobinM-code · Apr 27, 2022 · 594df4f · 594df4f
1 parent 8c4927f
commit 594df4f
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/ldsc_polyfun/irwls.py b/ldsc_polyfun/irwls.py
@@ -125,7 +125,7 @@ def irwls(cls, x, y, update_func, n_blocks, w, slow=False, separators=None):
                 x, y, n_blocks, separators=separators)
         else:
             jknife = jk.LstsqJackknifeFast(
-                x, y, n_blocks, separators=separators)
+                x, y, n_blocks=n_blocks, separators=separators)
 
         return jknife
 

diff --git a/ldsc_polyfun/jackknife.py b/ldsc_polyfun/jackknife.py
@@ -254,7 +254,7 @@ def delete_values(cls, x, y, func, s):
         return np.concatenate(d, axis=0)
 
 
-    def __init__(self, x, y, is_large_chi2, n_blocks=None, nn=False, separators=None, chr_num=None, evenodd_split=False, nnls_exact=False):
+    def __init__(self, x, y, is_large_chi2=False, n_blocks=None, nn=False, separators=None, chr_num=None, evenodd_split=False, nnls_exact=False):
 
         Jackknife.__init__(self, x, y, n_blocks, separators)
 
@@ -323,7 +323,7 @@ def __init__(self, x, y, is_large_chi2, n_blocks=None, nn=False, separators=None
 
 class LstsqJackknifeFast(Jackknife):
 
-    def __init__(self, x, y, is_large_chi2, n_blocks=None, separators=None, chr_num=None, evenodd_split=False):
+    def __init__(self, x, y, is_large_chi2=False, n_blocks=None, separators=None, chr_num=None, evenodd_split=False):
 
         #compute jackknife estimates using all SNPs
         Jackknife.__init__(self, x, y, n_blocks, separators)