List of requirements

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Joakim Karlsson edited this page Sep 6, 2013 · 3 revisions

The following is required to run this pipeline:

Perl modules:

BioPerl
File::Slurp
Parallel::ForkManager

Other software:

Muscle

Files:

proteome files
genome files
genome annotation files
an otholog groups file (output from OrthoMCL)