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1. DeepSPM DeepSPM Public

   A machine learning approach allowing to acquire and classify data autonomously in multi-day Scanning Probe Microscopy experiments

   Python 22 8

2. Kainmueller-Lab/PatchPerPix Kainmueller-Lab/PatchPerPix Public

   official implementation of the PatchPerPix instance segmentation method

   Python 30 5

3. funkelab/linajea funkelab/linajea Public

   Python 17 7

4. Kainmueller-Lab/evaluate-instance-segmentation Kainmueller-Lab/evaluate-instance-segmentation Public

   Evaluation scripts for nuclei instance segmentation in 2d and 3d

   Python 5 2

5. Kainmueller-Lab/shift_equivariance_unet Kainmueller-Lab/shift_equivariance_unet Public

   How Shift Equivariance Impacts Metric Learning for Instance Segmentation

   Jupyter Notebook 3 2

6. Kainmueller-Lab/aux_cpv_loss Kainmueller-Lab/aux_cpv_loss Public

   An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images

   Python 3 1