Introduction to Bioinformatic skills lectures:
Lecture 1 and 2. Introduction to unix following "Unix and Perl Primer for Biologists " by Dr. Ian Korf
Lecture 3. Using AHPCC and using NCBI database
Lecture 4. Accessing AHPCC modules and using conda
Lecture 5 and 6. Writing scripts and scheduling jobs in SLURM
Lecture 7. FASTQC and Trimmomatic
Lecture 8. Seqtk to manipulate FASTQ/A and Local BLAST
Lecture 9. Mapping to reference genomes using BWA
Lecture 10. Using IGV to visualize genomic data
Lecture 11. Assembling genomes
Lecture 12. Downloading data from EBI/NCBI