v2.0.0

Major upgrade to GGCAT, main changes:

• Add support for fast eulertigs and simplitigs
• Add new compaction step to reduce intermediate disk usage for uncolored graph building
• Fix too many open files error
• Fix colors hashmap race condition that sometimes created more colorsets than needed
• Implement both GFA 1 and GFA 2 outputs
• Fix greedy matchtigs computation bug

v1.1.1

• Implement GFA output
• Fix debug assertion + memory tracker bug

v1.1.0

What's Changed

• Fix AsyncSliceQueue by @jnalanko in #22
• Enable impl_trait_in_assoc_type feature by @jnalanko in #23
• Fix C++ API makefile when compiler is not called g++ by @tmaklin in #28
• Fixed compilation on Mac OS by @jermp in #29
• Mac OS fix: convert 4-space indentation to 1 tab by @jermp in #30
• Add -fPIE to ggcat-cpp-api Makefile by @rob-p in #32
• Update to current version of matchtigs by @sebschmi in #33
• Fix header dependency issues when building with GCC 13 by @tmaklin in #34

Full Changelog: v1.0_beta.1...v1.1.0

GGCAT v1.0_beta.1

First pre-release of GGCAT, the tool implementing the algorithm described in Extremely-fast construction and querying of compacted and colored de Bruijn graphs with GGCAT

This version was used to produce the results shown in the article.

Publication: https://www.biorxiv.org/content/10.1101/2022.10.24.513174v2