added two videos

anders-biostat · Jul 15, 2024 · 4d33738 · 4d33738
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diff --git a/_site/index.html b/_site/index.html
@@ -219,10 +219,18 @@ <h2 class="anchored" data-anchor-id="material-and-video-recodings">Material and
 <li><a href="cca.html">CCA Integration</a> (preliminary)</li>
 <li><a href="homework_smoothing.html">Homework: Smoothing</a></li>
 </ul></li>
-<li>prepared for following lectures
+<li>Lecture of 2024-07-08
 <ul>
+<li><a href="https://youtu.be/tOoKwd4ZS6o">Video</a></li>
 <li><a href="homework_integration.html">Homework: Integration</a></li>
 <li><a href="gamma_poisson.html">Gamma-Poisson regression</a></li>
+</ul></li>
+<li>Lecture of 2024-07-15
+<ul>
+<li><a href="https://youtu.be/0ax7aV4v0ys">Video</a></li>
+</ul></li>
+<li>prepared for following lectures
+<ul>
 <li><a href="cell_cycle.html">Cell cycle regression</a></li>
 </ul></li>
 </ul>

diff --git a/_site/search.json b/_site/search.json
@@ -18,7 +18,7 @@
     "href": "index.html#material-and-video-recodings",
     "title": "Mathematics of Single-cell Omics",
     "section": "Material and Video Recodings",
-    "text": "Material and Video Recodings\n\nLecture of 2024-04-22:\n\nVideo\nBiology Primer\nOverview High-throughput Sequencing\nA simple analysis with Seurat\nExample data: PBMC3k (available on 10X web site, and Moodle)\n\nExercise class of 2024-04-24\n\nVideo\nDoing the Seurat analysis “on foot”\n\nLecture of 2024-05-06\n\nVideo\nModularity clustering\nblackboard photo\n\nExercise class of 2024-05-08\n\nVideo\n\nImplementing modularity score in Python\nlouvain.py\n\nLecture of 2024-05-13\n\nVideo\nMathematics of PCA\nBlackboard photos: 1 2\n\nExercise class of 2024-05-15\n\nVideo:\nfitting pseudotimes and splines\nR code: pseudotime_1.R, splines_1.R\nexample data: cmss.rda (on Moodle)\n\nLecture of 2024-05-22\n\nVideo\nExpression dynamics along pseudotime trajectories\nSmoothing\nblackboard photo\n\nLecture of 2024-05-27\n\nVideo\nSmoothing with principal curves\n\nLecture of 2024-06-03\n\nVideo\nBlackboard photos: 1 2\nSpectra of graphs (Skript still missing)\nDiffusion on graphs\n\nLecture of 2024-06-10\n\nVideo\nLaplacian eigenmaps\n\nLecture of 2024-06-17\n\nVideo\nComparison of t-SNE and UMAP for our example data\nMathematics of t-SNE and UMAP\n\nLecture of 2024-06-24\n\nVideo\nBlackboard photo: 1\nReimplementing UMAP in Python\nCCA Integration (preliminary)\nHomework: Smoothing\n\nprepared for following lectures\n\nHomework: Integration\nGamma-Poisson regression\nCell cycle regression"
+    "text": "Material and Video Recodings\n\nLecture of 2024-04-22:\n\nVideo\nBiology Primer\nOverview High-throughput Sequencing\nA simple analysis with Seurat\nExample data: PBMC3k (available on 10X web site, and Moodle)\n\nExercise class of 2024-04-24\n\nVideo\nDoing the Seurat analysis “on foot”\n\nLecture of 2024-05-06\n\nVideo\nModularity clustering\nblackboard photo\n\nExercise class of 2024-05-08\n\nVideo\n\nImplementing modularity score in Python\nlouvain.py\n\nLecture of 2024-05-13\n\nVideo\nMathematics of PCA\nBlackboard photos: 1 2\n\nExercise class of 2024-05-15\n\nVideo:\nfitting pseudotimes and splines\nR code: pseudotime_1.R, splines_1.R\nexample data: cmss.rda (on Moodle)\n\nLecture of 2024-05-22\n\nVideo\nExpression dynamics along pseudotime trajectories\nSmoothing\nblackboard photo\n\nLecture of 2024-05-27\n\nVideo\nSmoothing with principal curves\n\nLecture of 2024-06-03\n\nVideo\nBlackboard photos: 1 2\nSpectra of graphs (Skript still missing)\nDiffusion on graphs\n\nLecture of 2024-06-10\n\nVideo\nLaplacian eigenmaps\n\nLecture of 2024-06-17\n\nVideo\nComparison of t-SNE and UMAP for our example data\nMathematics of t-SNE and UMAP\n\nLecture of 2024-06-24\n\nVideo\nBlackboard photo: 1\nReimplementing UMAP in Python\nCCA Integration (preliminary)\nHomework: Smoothing\n\nLecture of 2024-07-08\n\nVideo\nHomework: Integration\nGamma-Poisson regression\n\nLecture of 2024-07-15\n\nVideo\n\nprepared for following lectures\n\nCell cycle regression"
   },
   {
     "objectID": "index.html#source-code",

diff --git a/index.qmd b/index.qmd
@@ -93,9 +93,13 @@ Place:
   - [Reimplementing UMAP in Python](UMAP_pedestrian.html)
   - [CCA Integration](cca.html) (preliminary)
   - [Homework: Smoothing](homework_smoothing.html)
-- prepared for following lectures 
+- Lecture of 2024-07-08
+  - [Video](https://youtu.be/tOoKwd4ZS6o)
   - [Homework: Integration](homework_integration.html)
   - [Gamma-Poisson regression](gamma_poisson.html)
+- Lecture of 2024-07-15
+  - [Video](https://youtu.be/0ax7aV4v0ys)
+- prepared for following lectures 
   - [Cell cycle regression](cell_cycle.html)
 
 ## Source code