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A repository for benchmarking Group-contribution models and Graph Neural Networks

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To Be Fair: A fair Benchmark of Group-Contribution and Machine-Learning based Property Models
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Table of Contents

About

In every ML-based property prediction paper, classical Group-contribution (GC) models have been a constant target for scrutiny due to the workflow associated with their development. A main point that is constantly highlighted is the fact that their ability to extrapolate remains untested considering that all available data were used for model calibration, leaving none for validation. While some have advocated that this approach is not necessarily wrong since classical GC models are parametric and thus the risk of overfitting is small, their ability to extrapolate to data beyond the training set is still not verified.

In this work, we develop a framework for fair development and comparison of GC-based ML models for a wide range of properties.

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Classical Approach Fair Approach

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Contributing

First off, thanks for taking the time to contribute! Contributions are what make the open-source community such an amazing place to learn, inspire, and create. Any contributions you make will benefit everybody else and are greatly appreciated.

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Authors & contributors

The original setup of this repository is by Adem R.N. Aouichaoui.

For a full list of all authors and contributors, see the contributors page.

Security

my_project follows good practices of security, but 100% security cannot be assured. my_project is provided "as is" without any warranty. Use at your own risk.

For more information and to report security issues, please refer to our security documentation.

License

This project is licensed under the GPLv3.

See LICENSE for more information.

Acknowledgements

Some of the code used in this project is adapted from the work by Paul Seghers. The project was conducted as part of his M.Sc. thesis in 2024.

The original code can be found in the GraPE repository.

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A repository for benchmarking Group-contribution models and Graph Neural Networks

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