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atheobold committed Sep 18, 2024
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4 changes: 2 additions & 2 deletions _freeze/site_libs/revealjs/dist/theme/quarto.css
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90 changes: 26 additions & 64 deletions docs/code-review/code-review-guidelines.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.57">
<meta name="generator" content="quarto-1.4.533">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>Reviewing Someone’s Code and Providing Helpful Feedback – Introduction to Statistical Computing in R</title>
<title>Introduction to Statistical Computing in R - Reviewing Someone’s Code and Providing Helpful Feedback</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand All @@ -33,7 +33,7 @@
}
@media print {
pre > code.sourceCode { white-space: pre-wrap; }
pre > code.sourceCode > span { display: inline-block; text-indent: -5em; padding-left: 5em; }
pre > code.sourceCode > span { text-indent: -5em; padding-left: 5em; }
}
pre.numberSource code
{ counter-reset: source-line 0; }
Expand Down Expand Up @@ -111,13 +111,13 @@
<header id="quarto-header" class="headroom fixed-top">
<nav class="quarto-secondary-nav">
<div class="container-fluid d-flex">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item">Reviewing Someone’s Code and Providing <strong>Helpful</strong> Feedback</li></ol></nav>
<a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<a class="flex-grow-1" role="button" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
<button type="button" class="btn quarto-search-button" aria-label="" onclick="window.quartoOpenSearch();">
<i class="bi bi-search"></i>
</button>
</div>
Expand Down Expand Up @@ -147,9 +147,9 @@
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="false">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="false">
<span class="menu-text">Course information</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -200,9 +200,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="false">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="false">
<span class="menu-text">Weekly materials</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -253,9 +253,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="false">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="false">
<span class="menu-text">Labs</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -574,7 +574,18 @@ <h3 class="anchored" data-anchor-id="example-reviews">Example Reviews</h3>
}
return false;
}
const onCopySuccess = function(e) {
const clipboard = new window.ClipboardJS('.code-copy-button', {
text: function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
});
clipboard.on('success', function(e) {
// button target
const button = e.trigger;
// don't keep focus
Expand Down Expand Up @@ -606,47 +617,7 @@ <h3 class="anchored" data-anchor-id="example-reviews">Example Reviews</h3>
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp("https:\/\/atheobold\.github\.io\/stat-331-website");
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
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link.href = link.dataset.originalHref;
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function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
Expand Down Expand Up @@ -681,11 +652,7 @@ <h3 class="anchored" data-anchor-id="example-reviews">Example Reviews</h3>
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note) {
return note.innerHTML;
} else {
return "";
}
return note.innerHTML;
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
Expand Down Expand Up @@ -733,12 +700,7 @@ <h3 class="anchored" data-anchor-id="example-reviews">Example Reviews</h3>
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
// TODO in 1.5, we should make sure this works without a callout special case
if (note.classList.contains("callout")) {
return note.outerHTML;
} else {
return note.innerHTML;
}
return note.innerHTML;
}
}
for (var i=0; i<xrefs.length; i++) {
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90 changes: 26 additions & 64 deletions docs/course-materials/computing-access.html
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Original file line number Diff line number Diff line change
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.57">
<meta name="generator" content="quarto-1.4.533">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">


<title>Computing access – Introduction to Statistical Computing in R</title>
<title>Introduction to Statistical Computing in R - Computing access</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
Expand Down Expand Up @@ -79,13 +79,13 @@
<header id="quarto-header" class="headroom fixed-top">
<nav class="quarto-secondary-nav">
<div class="container-fluid d-flex">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" role="button" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<button type="button" class="quarto-btn-toggle btn" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<i class="bi bi-layout-text-sidebar-reverse"></i>
</button>
<nav class="quarto-page-breadcrumbs" aria-label="breadcrumb"><ol class="breadcrumb"><li class="breadcrumb-item"><a href="../course-materials/course-overview.html">Course information</a></li><li class="breadcrumb-item"><a href="../course-materials/computing-access.html">Access</a></li></ol></nav>
<a class="flex-grow-1" role="navigation" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<a class="flex-grow-1" role="button" data-bs-toggle="collapse" data-bs-target=".quarto-sidebar-collapse-item" aria-controls="quarto-sidebar" aria-expanded="false" aria-label="Toggle sidebar navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
</a>
<button type="button" class="btn quarto-search-button" aria-label="Search" onclick="window.quartoOpenSearch();">
<button type="button" class="btn quarto-search-button" aria-label="" onclick="window.quartoOpenSearch();">
<i class="bi bi-search"></i>
</button>
</div>
Expand Down Expand Up @@ -115,9 +115,9 @@
<ul class="list-unstyled mt-1">
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true">
<a class="sidebar-item-text sidebar-link text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true">
<span class="menu-text">Course information</span></a>
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" role="navigation" aria-expanded="true" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-1" aria-expanded="true" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -168,9 +168,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="false">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="false">
<span class="menu-text">Weekly materials</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" role="navigation" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-2" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -221,9 +221,9 @@
</li>
<li class="sidebar-item sidebar-item-section">
<div class="sidebar-item-container">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="false">
<a class="sidebar-item-text sidebar-link text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="false">
<span class="menu-text">Labs</span></a>
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" role="navigation" aria-expanded="false" aria-label="Toggle section">
<a class="sidebar-item-toggle text-start collapsed" data-bs-toggle="collapse" data-bs-target="#quarto-sidebar-section-3" aria-expanded="false" aria-label="Toggle section">
<i class="bi bi-chevron-right ms-2"></i>
</a>
</div>
Expand Down Expand Up @@ -510,7 +510,18 @@ <h2 class="anchored" data-anchor-id="version-control">Version Control</h2>
}
return false;
}
const onCopySuccess = function(e) {
const clipboard = new window.ClipboardJS('.code-copy-button', {
text: function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
});
clipboard.on('success', function(e) {
// button target
const button = e.trigger;
// don't keep focus
Expand Down Expand Up @@ -542,47 +553,7 @@ <h2 class="anchored" data-anchor-id="version-control">Version Control</h2>
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
// For code content inside modals, clipBoardJS needs to be initialized with a container option
// TODO: Check when it could be a function (https://github.com/zenorocha/clipboard.js/issues/860)
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp("https:\/\/atheobold\.github\.io\/stat-331-website");
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
// undo the damage that might have been done by quarto-nav.js in the case of
// links that we want to consider external
if (link.dataset.originalHref !== undefined) {
link.href = link.dataset.originalHref;
}
}
}
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
Expand Down Expand Up @@ -617,11 +588,7 @@ <h2 class="anchored" data-anchor-id="version-control">Version Control</h2>
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note) {
return note.innerHTML;
} else {
return "";
}
return note.innerHTML;
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
Expand Down Expand Up @@ -669,12 +636,7 @@ <h2 class="anchored" data-anchor-id="version-control">Version Control</h2>
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
// TODO in 1.5, we should make sure this works without a callout special case
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return note.outerHTML;
} else {
return note.innerHTML;
}
return note.innerHTML;
}
}
for (var i=0; i<xrefs.length; i++) {
Expand Down Expand Up @@ -897,7 +859,7 @@ <h2 class="anchored" data-anchor-id="version-control">Version Control</h2>
</script>
<nav class="page-navigation">
<div class="nav-page nav-page-previous">
<a href="../index.html" class="pagination-link" aria-label="Schedule">
<a href="../index.html" class="pagination-link aria-label=" schedule"="">
<i class="bi bi-arrow-left-short"></i> <span class="nav-page-text">Schedule</span>
</a>
</div>
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