minor details adjusted

deepcave/custom_queue.py

@@ -324,8 +324,7 @@ def remove_jobs(registry: BaseRegistry, job_id: Optional[str] = None) -> None:
                     except Exception:
                         registry.remove(self.get_job(job_id))
 
-        # Issue opened
-        remove_jobs(self._queue, job_id)
+        remove_jobs(self._queue, job_id)  # type: ignore
         remove_jobs(self._queue.finished_job_registry, job_id)
         remove_jobs(self._queue.canceled_job_registry, job_id)
 

deepcave/plugins/__init__.py

@@ -558,9 +558,9 @@ def _process_raw_outputs(
         # passed runs could be a list, but load mpl outputs and load outputs do not
         # accept lists, but expect single runs
         if mpl_active:
-            outputs = self.__class__.load_mpl_outputs(passed_runs, cleaned_inputs, passed_outputs)
+            outputs = self.__class__.load_mpl_outputs(passed_runs, cleaned_inputs, passed_outputs)  # type: ignore # noqa: E501
         else:
-            outputs = self.__class__.load_outputs(passed_runs, cleaned_inputs, passed_outputs)
+            outputs = self.__class__.load_outputs(passed_runs, cleaned_inputs, passed_outputs)  # type: ignore # noqa: E501
 
         logger.debug("Raw outputs processed successfully.")
 
@@ -1342,7 +1342,9 @@ def load_outputs(
         Note
         ----
         The passed `inputs` are cleaned and therefore differs compared to `load_inputs` or
-        `load_dependency_inputs`. Please see `_clean_inputs` for more information.
+        `load_dependency_inputs`.
+        Inputs are cleaned s.t. only the first value is used.
+        Also, boolean values are casted to booleans.
 
         Parameters
         ----------
@@ -1374,7 +1376,8 @@ def load_mpl_outputs(
         Note
         ----
         The passed `inputs` are cleaned and therefore differs compared to `load_inputs` or
-        `load_dependency_inputs`. Please see `_clean_inputs` for more information.
+        `load_dependency_inputs`. Inputs are cleaned s.t. only the first value is used.
+        Also, boolean values are casted to booleans.
 
         Parameters
         ----------
@@ -1406,7 +1409,8 @@ def process(run: AbstractRun, inputs: Dict[str, Any]) -> Dict[str, Any]:
         Note
         ----
         The passed `inputs` are cleaned and therefore differs compared to `load_inputs` or
-        `load_dependency_inputs`. Please see `_clean_inputs` for more information.
+        `load_dependency_inputs`. Inputs are cleaned s.t. only the first value is used.
+        Also, boolean values are casted to booleans.
 
         Parameters
         ----------

deepcave/plugins/budget/budget_correlation.py

@@ -92,8 +92,7 @@ def get_input_layout(register: Callable) -> List[html.Div]:
             ),
         ]
 
-    # Types dont match superclass
-    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Dict[str, Any]]:
+    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Dict[str, Any]]:  # type: ignore
         """
         Work like 'load_inputs' but called after inputs have changed.
 
@@ -160,7 +159,6 @@ def process(run: AbstractRun, inputs: Dict[str, int]) -> Dict[str, Any]:
         budget_ids = run.get_budget_ids(include_combined=False)
 
         # Add symmetric correlations; table ready
-        # Issue already opened with this matrix
         correlations_symmetric: DefaultDict[str, Dict[str, float]] = defaultdict(dict)
 
         correlations: DefaultDict[str, Dict[str, float]] = defaultdict(dict)
@@ -185,14 +183,14 @@ def process(run: AbstractRun, inputs: Dict[str, int]) -> Dict[str, Any]:
                     c2 += [costs2[config_id][objective_id]]
 
                 correlation = round(stats.spearmanr(c1, c2).correlation, 2)
-                correlations_symmetric["Budget"][budget2_readable] = budget2_readable
-                correlations_symmetric[budget1_readable][budget2_readable] = correlation
+                correlations_symmetric["Budget"][budget2_readable] = budget2_readable  # type: ignore # noqa: E501
+                correlations_symmetric[budget1_readable][budget2_readable] = correlation  # type: ignore # noqa: E501
 
                 # Exclude if budget2 is higher than budget1
                 if budget2 > budget1:
                     continue
 
-                correlations[budget1_readable][budget2_readable] = correlation
+                correlations[budget1_readable][budget2_readable] = correlation  # type: ignore
 
         return {
             "correlations": correlations,
@@ -231,8 +229,7 @@ def get_output_layout(register: Callable) -> List[Any]:
         ]
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, _, outputs) -> List[Any]:
+    def load_outputs(run, _, outputs) -> List[Any]:  # type: ignore
         """
         Read the raw data and prepare it for the layout.
 

deepcave/plugins/dynamic.py

@@ -118,8 +118,7 @@ def plugin_output_update(_: Any, *inputs_list: str) -> Any:
             return self._process_raw_outputs(inputs, raw_outputs)
 
     @interactive
-    # Return type does not match the superclass
-    def __call__(self) -> List[Component]:
+    def __call__(self) -> List[Component]:  # type: ignore
         """
         Return the components for the plugin.
 

deepcave/plugins/hyperparameter/importances.py

@@ -179,8 +179,7 @@ def load_inputs(self) -> Dict[str, Dict[str, Any]]:
             "budget_ids": {"options": get_checklist_options(), "value": []},
         }
 
-    # Types dont match superclass
-    def load_dependency_inputs(self, run, _: Any, inputs: Dict[str, Any]) -> Dict[str, Any]:
+    def load_dependency_inputs(self, run, _: Any, inputs: Dict[str, Any]) -> Dict[str, Any]:  # type: ignore # noqa: E501
         """
         Work like 'load_inputs' but called after inputs have changed.
 
@@ -254,7 +253,6 @@ def load_dependency_inputs(self, run, _: Any, inputs: Dict[str, Any]) -> Dict[st
         }
 
     @staticmethod
-    # Return doesnt match superclass type
     def process(run: AbstractRun, inputs: Dict[str, Any]) -> Dict[str, Any]:
         """
         Return raw data based on the run and input data.
@@ -315,7 +313,7 @@ def process(run: AbstractRun, inputs: Dict[str, Any]) -> Dict[str, Any]:
             importances = evaluator.get_importances(hp_names)
             data[budget_id] = importances
 
-        return data
+        return data  # type: ignore
 
     @staticmethod
     def get_output_layout(register: Callable) -> dcc.Graph:
@@ -336,8 +334,7 @@ def get_output_layout(register: Callable) -> dcc.Graph:
         return dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT})
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, inputs, outputs) -> go.Figure:
+    def load_outputs(run, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read in raw data and prepare for layout.
 
@@ -458,8 +455,7 @@ def get_mpl_output_layout(register: Callable) -> html.Img:
         )
 
     @staticmethod
-    # Types dont match superclass
-    def load_mpl_outputs(run, inputs: Dict[str, Any], outputs):
+    def load_mpl_outputs(run, inputs: Dict[str, Any], outputs):  # type: ignore
         """
         Read the raw data and prepare it for the layout.
 
@@ -536,8 +532,7 @@ def load_mpl_outputs(run, inputs: Dict[str, Any], outputs):
                 x_values,
                 y,
                 yerr=y_err,
-                # plt is matplotlib object and has no function get_color, Issue opened
-                color=plt.get_color(budget_id),
+                color=plt.get_color(budget_id),  # type: ignore
                 label=budget,
                 error_kw=dict(lw=1, capsize=2, capthick=1),
             )
@@ -547,5 +542,5 @@ def load_mpl_outputs(run, inputs: Dict[str, Any], outputs):
         # Rotate x ticks
         plt.xticks(x_values, x_labels, rotation=90)
         plt.ylabel("Importance")
-        # plt is matplotlib object and has no function render, Issue opened
-        return plt.render()
+
+        return plt.render()  # type: ignore

deepcave/plugins/hyperparameter/pdp.py

@@ -198,8 +198,7 @@ def load_inputs(self) -> Dict[str, Dict[str, Any]]:
             "show_ice": {"options": get_select_options(binary=True), "value": "true"},
         }
 
-    # Types dont match superclass
-    def load_dependency_inputs(self, run, previous_inputs, inputs) -> Dict[str, Any]:
+    def load_dependency_inputs(self, run, previous_inputs, inputs) -> Dict[str, Any]:  # type: ignore # noqa: E501
         """
         Work like 'load_inputs' but called after inputs have changed.
 
@@ -214,6 +213,9 @@ def load_dependency_inputs(self, run, previous_inputs, inputs) -> Dict[str, Any]
             The selected run.
         inputs
             Current content of the inputs.
+        previous_inputs
+            Previous content of the inputs.
+            Not used in this specific function.
 
         Returns
         -------
@@ -253,8 +255,7 @@ def load_dependency_inputs(self, run, previous_inputs, inputs) -> Dict[str, Any]
         }
 
     @staticmethod
-    # Types dont match superclass
-    def process(run, inputs) -> Dict[str, Any]:
+    def process(run, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Return raw data based on a run and the input data.
 
@@ -367,8 +368,7 @@ def get_output_layout(register: Callable) -> dcc.Graph:
         return dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT})
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, inputs, outputs) -> go.Figure:
+    def load_outputs(run, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read the raw data and prepare it for the layout.
 

deepcave/plugins/objective/configuration_cube.py

@@ -158,8 +158,7 @@ def load_inputs(self) -> Dict[str, Any]:
             "hyperparameter_names": {"options": get_checklist_options(), "value": []},
         }
 
-    # Types dont match superclass
-    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Any]:
+    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Work like 'load_inputs' but called after inputs have changed.
 
@@ -296,8 +295,7 @@ def get_output_layout(register: Callable) -> Tuple[dcc.Graph,]:
         return (dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT}),)
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, inputs, outputs) -> go.Figure:
+    def load_outputs(run, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read in the raw data and prepares them for the layout.
 

deepcave/plugins/objective/cost_over_time.py

@@ -217,8 +217,7 @@ def load_inputs(self) -> Dict[str, Any]:
         }
 
     @staticmethod
-    # Types dont match superclass
-    def process(run, inputs) -> Dict[str, Any]:
+    def process(run, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Return raw data based on a run and input data.
 
@@ -278,8 +277,7 @@ def get_output_layout(register: Callable) -> dcc.Graph:
         return dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT})
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(runs, inputs, outputs) -> go.Figure:
+    def load_outputs(runs, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read in the raw data and prepare them for the layout.
 

deepcave/plugins/objective/parallel_coordinates.py

@@ -184,8 +184,7 @@ def load_inputs(self) -> Dict[str, Dict[str, Any]]:
             "hide_hps": {"hidden": True},
         }
 
-    # Types dont match superclass
-    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Any]:
+    def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Work like 'load_inputs' but called after inputs have changed.
 
@@ -263,8 +262,7 @@ def load_dependency_inputs(self, run, _, inputs) -> Dict[str, Any]:
         }
 
     @staticmethod
-    # Types dont match superclass
-    def process(run, inputs) -> Dict[str, Any]:
+    def process(run, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Return raw data based on a run and input data.
 
@@ -325,8 +323,7 @@ def get_output_layout(register: Callable) -> dcc.Graph:
         return dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT})
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, inputs, outputs) -> go.Figure:
+    def load_outputs(run, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read in the raw data and prepare them for the layout.
 

deepcave/plugins/objective/pareto_front.py

@@ -232,8 +232,7 @@ def load_inputs(self) -> Dict[str, Dict[str, Any]]:
         }
 
     @staticmethod
-    # Types dont match superclass
-    def process(run, inputs) -> Dict[str, Any]:
+    def process(run, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Return raw data based on a run and input data.
 
@@ -332,8 +331,7 @@ def get_output_layout(register: Callable) -> dcc.Graph:
         return dcc.Graph(register("graph", "figure"), style={"height": config.FIGURE_HEIGHT})
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(runs, inputs, outputs) -> go.Figure:
+    def load_outputs(runs, inputs, outputs) -> go.Figure:  # type: ignore
         """
         Read in the raw data and prepare them for the layout.
 
@@ -470,8 +468,7 @@ def get_mpl_output_layout(register: Callable) -> html.Img:
         )
 
     @staticmethod
-    # Types dont match superclass
-    def load_mpl_outputs(runs, inputs, outputs):
+    def load_mpl_outputs(runs, inputs, outputs):  # type: ignore
         """
         Read in the raw data and prepare them for the layout.
 
@@ -521,10 +518,9 @@ def load_mpl_outputs(runs, inputs, outputs):
                     x += [points[point_idx][0]]
                     y += [points[point_idx][1]]
 
-            # Issue opened
-            color = plt.get_color(idx)  # , alpha=0.1)
-            # Issue opened
-            color_pareto = plt.get_color(idx)
+            # , alpha=0.1)
+            color = plt.get_color(idx)  # type: ignore
+            color_pareto = plt.get_color(idx)  # type: ignore
 
             if show_all:
                 plt.scatter(x, y, color=color, marker="o", alpha=0.1, s=3)
@@ -558,5 +554,5 @@ def load_mpl_outputs(runs, inputs, outputs):
             plt.ylabel(objective_2.name)
 
         plt.legend()
-        # Issue already opened
-        return plt.render()
+
+        return plt.render()  # type: ignore

deepcave/plugins/static.py

@@ -378,8 +378,7 @@ def _get_job_id(self, run_name: str, inputs_key: str) -> str:
         return f"{run_name}-{inputs_key}"
 
     @interactive
-    # Return type does not match the superclass
-    def __call__(self) -> List[Component]:
+    def __call__(self) -> List[Component]:  # type: ignore
         """
         Return the components for the plugin.
 

deepcave/plugins/summary/configurations.py

@@ -113,8 +113,7 @@ def load_inputs(self) -> Dict[str, Any]:
             "config_id": {"min": 0, "max": 0, "marks": get_slider_marks(), "value": 0},
         }
 
-    # Types dont match superclass
-    def load_dependency_inputs(
+    def load_dependency_inputs(  # type: ignore
         self, run, previous_inputs: Dict[str, Any], inputs: Dict[str, Any]
     ) -> Dict[str, Any]:
         """
@@ -131,6 +130,7 @@ def load_dependency_inputs(
             The selected run.
         previous_inputs :
             Previous content of the inputs.
+            Not used in this specific function
         inputs : Dict[str, Any]
             The current content of the inputs.
 
@@ -155,8 +155,7 @@ def load_dependency_inputs(
         }
 
     @staticmethod
-    # Types dont match superclass
-    def process(run, inputs) -> Dict[str, Any]:
+    def process(run, inputs) -> Dict[str, Any]:  # type: ignore
         """
         Return raw data based on a run and input data.
 
@@ -454,8 +453,7 @@ def _get_configspace_figure(
         return fig
 
     @staticmethod
-    # Types dont match superclass
-    def load_outputs(run, inputs, outputs) -> List[Any]:
+    def load_outputs(run, inputs, outputs) -> List[Any]:  # type: ignore
         """
         Read in the raw data and prepare them for the layout.