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Corrects printing issue when unitig generated with no colours #29

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merged 1 commit into from
Jan 15, 2024
Merged

Corrects printing issue when unitig generated with no colours #29

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13 changes: 5 additions & 8 deletions unitig_caller/bifrost.py
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Original file line number Diff line number Diff line change
Expand Up @@ -21,17 +21,15 @@ def rtab_format(unitig_map, input_colour_pref, outfile):
"""
with open(outfile, "w") as o:
o.write("Unitig_sequence")
for index, colour_name in enumerate(input_colour_pref):
for colour_name in input_colour_pref:
o.write("\t" + colour_name)
if index == len(input_colour_pref) - 1:
o.write("\n")
o.write("\n")
for unitig, colours_vector in unitig_map.items():
o.write(unitig)
for index, colour in enumerate(colours_vector):
for colour in colours_vector:
colour = int(colour == True)
o.write("\t" + str(colour))
if index == len(colours_vector) - 1:
o.write("\n")
o.write("\n")

def pyseer_format(unitig_map, input_colour_pref, outfile):
"""Creates pyseer file.
Expand All @@ -50,5 +48,4 @@ def pyseer_format(unitig_map, input_colour_pref, outfile):
for index, colour in enumerate(colours_vector):
if colour:
o.write(" " + input_colour_pref[index] + ":1")
if index == len(colours_vector) - 1:
o.write("\n")
o.write("\n")