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replace quantms-utils 0.0.16 -> 0.0.17
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ypriverol committed Dec 3, 2024
1 parent 98d0861 commit 2338d1b
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Showing 10 changed files with 20 additions and 20 deletions.
4 changes: 2 additions & 2 deletions modules/local/add_sage_feat/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SAGEFEATURE {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
tuple val(meta), path(id_file), path(extra_feat)
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4 changes: 2 additions & 2 deletions modules/local/diannconvert/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process DIANNCONVERT {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
path(report)
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4 changes: 2 additions & 2 deletions modules/local/extract_psm/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process PSMCONVERSION {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"


input:
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4 changes: 2 additions & 2 deletions modules/local/extract_sample/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process GETSAMPLE {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"


input:
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4 changes: 2 additions & 2 deletions modules/local/generate_diann_cfg/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process GENERATE_DIANN_CFG {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
val(meta)
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4 changes: 2 additions & 2 deletions modules/local/mzmlstatistics/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,8 @@ process MZMLSTATISTICS {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
tuple val(meta), path(ms_file)
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4 changes: 2 additions & 2 deletions modules/local/preprocess_expdesign.nf
Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,8 @@ process PREPROCESS_EXPDESIGN {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
path design
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4 changes: 2 additions & 2 deletions modules/local/samplesheet_check.nf
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,8 @@ process SAMPLESHEET_CHECK {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
path input_file
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4 changes: 2 additions & 2 deletions modules/local/sdrfparsing/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SDRFPARSING {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
path sdrf
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4 changes: 2 additions & 2 deletions modules/local/spectrum2features/main.nf
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@ process SPECTRUM2FEATURES {

conda "bioconda::quantms-utils=0.0.17"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyhdfd78af_0' :
'biocontainers/quantms-utils:0.0.17--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/quantms-utils:0.0.17--pyh7e72e81_0' :
'biocontainers/quantms-utils:0.0.17--pyh7e72e81_0' }"

input:
tuple val(meta), path(id_file), path(ms_file)
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