fix: allow ccd residues with missing coords #731
davegraystest_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
4m 48s
Generate wheels matrix
11s
Check code style
11s
Build source distribution
25s
Test interfaces to databases and applications
2m 46s
Test interface to Muscle 5
1m 8s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
14 errors and 14 warnings
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Test interfaces to databases and applications
Process completed with exit code 1.
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Build & Test (cp311-macosx_x86_64, macos-latest)
Command ['arch', '-x86_64', '/bin/sh', '-c', 'pytest /Users/runner/work/biotite/biotite --durations=50 --ignore=/Users/runner/work/biotite/biotite//tests//sequence//align//test_statistics.py --ignore=/Users/runner/work/biotite/biotite//tests//application --ignore=/Users/runner/work/biotite/biotite//tests//database --ignore=/Users/runner/work/biotite/biotite//tests//test_doctest.py --ignore=/Users/runner/work/biotite/biotite//tests//test_modname.py\n'] failed with code 1.
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Build & Test (cp311-macosx_x86_64, macos-latest)
Process completed with exit code 1.
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Build & Test (cp311-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp312-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp313-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp310-win_amd64, windows-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp310-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp313-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp310-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp312-macosx_x86_64, macos-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The job was canceled because "cp311-macosx_x86_64_macos" failed.
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Generate wheels matrix
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Check code style
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build CCD and wheel for reusing it in several CI jobs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Upload CCD to GitHub Releases
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build source distribution
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interface to Muscle 5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build documentation
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Run benchmarks
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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ccd
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33.3 MB |
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documentation
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74.4 MB |
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internal-build
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49.8 MB |
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release-cp310-macosx_arm64
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36.7 MB |
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release-cp311-macosx_arm64
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36.7 MB |
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release-cp312-macosx_arm64
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36.7 MB |
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release-cp313-macosx_arm64
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36.7 MB |
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release-sdist
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33.8 MB |
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