Changelog

Additions

Added application.muscle.Muscle5App to support the changed CLI of Muscle 5
Added structure.orient_principal_components() to orient atom coordinates
to the given axes
biotite.structure.io.pdbx.get_structure() uses label_xxx or auth_xxx
field as fallback, if the respective other one is not available
Added default_bond_type parameter to
biotite.structure.io.write_structure_to_ctab() and
biotite.structure.connect_via_distances to allow the user to change the
BondType in the generated BondList

sequence.io.gff.GFFFile.read() is now able to read GFF records with trailing
tabs
Fixed DeprecationWarning in structure.align_vectors() (#295)
Fixed alignment in atom name column in
structure.io.pdb.PDBFile.write()
Fixed error handling in structure.index_xxx() functions, if invalid input
shape is given
Ensured quoted values in looped categories will not be truncated in
structure.io.pdbx.PDBxFile.set_category()