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212 Open 378 Closed
212 Open 378 Closed
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Issues list

Error in STEP 15 during CNV analysis：plot_cnv(): auto thresholding at: (NA , NA)
#683 opened Jan 4, 2025 by Duiduipeng
Maxing out memory, crashing RStudio and Computer at Step 18
#682 opened Dec 31, 2024 by alexwskh
1
Assigned states of reference cells
#681 opened Dec 30, 2024 by melaniebalaz
Error in STEP 15: computing tumor subclusters via leiden,,heatmap.cnv(obs_data, Rowv = obs_dendrogram, Colv = FALSE, cluster.by.row = TRUE, : 'RowIndividualColors' must be a character vector of length nrow(x)
#680 opened Dec 28, 2024 by qiuhuijiajia
2
how to run in many cells dataset?
#679 opened Nov 30, 2024 by amingson
Duplication and loss signals in the reference cells
#678 opened Oct 17, 2024 by hxj5
Error in step 15
#677 opened Oct 3, 2024 by dipingxian431
1
Error in apply(cnv_means, 2, function(i) which(i == max(i))) : dim(X) must have a positive length Calls: <Anonymous> -> <Anonymous> -> reassignCNV -> reassignCNV -> apply Execution halted
#676 opened Sep 30, 2024 by FuduanPeng
Error in colnames<-(*tmp*, value = cnv_regions) : attempt to set 'colnames' on an object with less than two dimensions Calls: <Anonymous> ... <Anonymous> -> removeCNV -> removeCNV -> colnames<- Execution halted
#675 opened Sep 30, 2024 by FuduanPeng
Using InferCNV for PBMCs
#674 opened Aug 21, 2024 by Urja25
InferCNV on normalized and scaled data
#673 opened Aug 21, 2024 by floriankreten
STEP 18 error
#672 opened Aug 7, 2024 by lifan2022
infercnv heatmap appearance of 'Reference' (non-malignant) cells: opinion required
#671 opened Aug 3, 2024 by jjacob12
2
Method question ： Bayesian Network Latent Mixture Model
#670 opened Jul 24, 2024 by kane9530
Step 7 computing tumor subclusters via random_trees NEVER FINISH
#668 opened Jul 15, 2024 by mluciarr
Not getting the reference part of the heatmap
#667 opened Jun 13, 2024 by Cristinacondel1
2
Subsetting inferCNV object
#666 opened Jun 7, 2024 by itismeangie
Error in ScaleData(): ! No layer matching pattern 'data' found. Please run NormalizeData and retry Run rlang::last_trace() to see where the error occurred.
#664 opened May 24, 2024 by Noralii
3
CNVs in the reference cells
#663 opened May 7, 2024 by NaCo-Pt
1
Plotting inferCNV heatmap of several samples
#662 opened May 3, 2024 by farhadfaghihi4
6
How to roll back inferCNV to a previous version
#661 opened May 2, 2024 by Ryeeeeeeeeee
Issues with "infercnv::add_to_seurat" function in infercnv analysis
#660 opened Apr 30, 2024 by MinxiaoYang
Error in validate_infercnv_obj(infercnv_obj): Problem detected w/ infercnv_obj and Error: No feature overlap between existing object and new layer data
#659 opened Apr 23, 2024 by Prakrithi-P
inferCNV development and support on hiatus
#658 opened Apr 22, 2024 by brianjohnhaas
2
Section of inferCNV heatmap blacked out
#657 opened Apr 22, 2024 by julie-jch
ProTip! Updated in the last three days: updated:>2025-01-08.