SlideSeq_develop

3.4.8

2024-12-12 (Date of Last Commit)

• Added a boolean variable is_slidetags; this does not affect the outputs of the pipeline

PairedTag_develop

1.9.1

2024-12-12 (Date of Last Commit)

• Added a boolean variable is_slidetags. Set to true if Slide-Tags pipeline calling Optimus, otherwise false.

Optimus_develop

7.9.1

2024-12-12 (Date of Last Commit)

• Added a boolean variable is_slidetags; set to false by default, but set to true if the Slide-Tags pipeline is calling Optimus

Multiome_develop

5.9.5

2024-12-12 (Date of Last Commit)

• Added a boolean variable is_slidetags; default is false but it is set to true if the Slide-Tags pipeline is calling Optimus

MultiSampleSmartSeq2SingleNucleus_develop

2.0.7

2024-12-12 (Date of Last Commit)

• Added a boolean variable is_slidetags; this does not affect the outputs of the pipeline

ImputationBeagle_development_v0.0.3

TSPS-341 remove tasks for recovering variants not in the reference pa…

UltimaGenomicsWholeGenomeGermline_develop

1.1.3

2024-12-05 (Date of Last Commit)

• Updated the name of the output for ReblockGVCFs; this does not affect this pipeline

ReblockGVCF_develop

2.4.0

2024-12-05 (Date of Last Commit)

• Updated output names for ReblockGVCF workflow from output_vcf and output_vcf_index to reblocked_gvcf and reblocked_gvcf_index respectively

BroadInternalUltimaGenomics_develop

1.1.3

2024-12-05 (Date of Last Commit)

• Updated the name of the output for ReblockGVCFs; this does not affect this pipeline

atac_v2.5.3

2.5.3

2024-11-22 (Date of Last Commit)

• Updated the warp-tools docker; this update changes the way gene_names are identified when creating gene expression h5ad files; does not impact ATAC workflow