bioDivRecordsAnalyses

This repository contains R Scripts to perform and reproduce all the analyses and figures of 'Exploring the impact of data curation criteria on the observed geographical distribution of mosses' It also includes the shapefiles and data used.

Cite as: Ronquillo, C., Stropp, J., Medina, N.G. & Hortal, J. (2023). Exploring the impact of data curation criteria on the observed geographical distribution of mosses. Ecology and Evolution

Workflow

The following diagram describes the workflow in which the scripts are organized to reproduce the methods sections of the paper.

flowchart TD;
  A[GBIF / CNABH Records] --> B(1 Records pre-processing);
  C(1b iDigBio Records Preprocessing)--> B;
  E[iDigBio Records] --> C;
  D(1c BIEN Records Preprocessing)--> B;
  F[BIEN Records] --> D;
  
  B --> G(2 Taxonomic Standardization);
  G --> H[Clean Dataset];
  H --> I(3 Records Quantification);
  H --> K(4 Inventory Completeness Analyses);
  K --> L[Inventory Completeness Estimators];
  L --> M(5 Quantification of Well-Sample Cells);
  
  I --> O(7 Figure / Maps Code);
  L --> O(7 Figure / Maps Code);
  M --> O(7 Figure / Maps Code);
  
  L --> N(6 Piecewise Regression Analyses - Latitudinal Gradient);
  
  style A fill:#d67da9, stroke:#333,stroke-width:2px,color:#fff;
  style E fill:#d67da9, stroke:#333,stroke-width:2px,color:#fff;
  style F fill:#d67da9, stroke:#333,stroke-width:2px,color:#fff;
  style H fill:#f9e4a6, stroke:#333,stroke-width:2px,color:#333;
  style L fill:#f9e4a6, stroke:#333,stroke-width:2px,color:#333;
  style C fill:#c4b1ee, stroke:#c4b1ee,stroke-width:2px,color:#fff;
  style D fill:#c4b1ee, stroke:#c4b1ee,stroke-width:2px,color:#fff;
    
  subgraph Raw datasets of records occurrences by biodiversity database
  A & E & F
  end;

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