add few more urls

cancervariants · Dec 30, 2024 · 6b059e8 · 6b059e8
1 parent 5406200
commit 6b059e8
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Showing 2 changed files with 13 additions and 2 deletions.
diff --git a/src/disease/schemas.py b/src/disease/schemas.py
@@ -96,9 +96,14 @@ class NamespacePrefix(Enum):
     NamespacePrefix.DOID: "http://purl.obolibrary.org/obo/doid.owl",
     NamespacePrefix.OMIM: "https://www.omim.org",
     NamespacePrefix.ONCOTREE: "https://oncotree.mskcc.org",
+    NamespacePrefix.COHD: "https://cohd.io",
+    NamespacePrefix.DECIPHER: "https://www.deciphergenomics.org",
     NamespacePrefix.EFO: "https://www.ebi.ac.uk/efo",
+    NamespacePrefix.GARD: "https://rarediseases.info.nih.gov",
     NamespacePrefix.HP: "http://purl.obolibrary.org/obo/hp.owl",
     NamespacePrefix.HPO: "http://purl.obolibrary.org/obo/hp.owl",
+    NamespacePrefix.ICD11: "https://icd.who.int/en",
+    NamespacePrefix.ICDO: "https://www.who.int/standards/classifications/other-classifications/international-classification-of-diseases-for-oncology",
     NamespacePrefix.KEGG: "https://www.genome.jp/kegg/disease/",
     NamespacePrefix.MEDDRA: "https://www.meddra.org/",
     NamespacePrefix.MEDGEN: "https://www.ncbi.nlm.nih.gov/medgen/",

diff --git a/tests/unit/test_query.py b/tests/unit/test_query.py
@@ -52,7 +52,10 @@ def neuroblastoma():
                 "relation": "relatedMatch",
             },
             {
-                "coding": {"code": "9500/3", "system": "icdo"},
+                "coding": {
+                    "code": "9500/3",
+                    "system": "https://www.who.int/standards/classifications/other-classifications/international-classification-of-diseases-for-oncology",
+                },
                 "relation": "relatedMatch",
             },
             {
@@ -63,7 +66,10 @@ def neuroblastoma():
                 "relation": "relatedMatch",
             },
             {
-                "coding": {"code": "7185", "system": "gard"},
+                "coding": {
+                    "code": "7185",
+                    "system": "https://rarediseases.info.nih.gov",
+                },
                 "relation": "relatedMatch",
             },
             {