Merge pull request #305 from cancervariants/issue-303-main

refactor!: changes to help with serverless
cancervariants · Nov 2, 2022 · 9b9e24d · 9b9e24d
2 parents 888d539 + 9e72496
commit 9b9e24d
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Showing 17 changed files with 224 additions and 485 deletions.
diff --git a/.ebextensions/00sample_log.config b/.ebextensions/00sample_log.config
diff --git a/.ebextensions/01app.config b/.ebextensions/01app.config
diff --git a/Pipfile b/Pipfile
@@ -6,31 +6,20 @@ verify_ssl = true
 [packages]
 pydantic = ">=1.8.2"
 fastapi = ">=0.72.0"
-urllib3 = ">=1.26.5"
-uvicorn = "*"
 click = "*"
-lxml = ">=4.6.5"
+uvicorn = "*"
 boto3 = "*"
-cython = "*"
+"ga4gh.vrsatile.pydantic" = "==0.0.11"
+
+[dev-packages]
+thera-py = {editable = true, path = "."}
+disease-normalizer = "==0.2.15"
 owlready2 = "*"
-pyparsing = "*"
 rdflib = "*"
-uvloop = "*"
-websockets = ">=9.1"
-httptools = "*"
-typing-extensions = "*"
 wikibaseintegrator = ">=0.12.0"
-ipykernel = "*"
-bs4 = "*"
-pyyaml = "*"
-disease-normalizer = ">=0.2.13"
-"ga4gh.vrsatile.pydantic" = ">=0.1.dev1"
 chembl-downloader = "*"
 bioversions = ">=0.4.3"
-pystow = "*"
-
-[dev-packages]
-thera-py = {editable = true, path = "."}
+ipykernel = "*"
 pytest = "*"
 pytest-cov = "*"
 pre-commit = "*"

diff --git a/Procfile b/Procfile
diff --git a/codebuild/deploy_eb_env.py b/codebuild/deploy_eb_env.py
diff --git a/codebuild/deploy_eb_env_dev.py b/codebuild/deploy_eb_env_dev.py
diff --git a/codebuild/terminate_eb_env.py b/codebuild/terminate_eb_env.py
diff --git a/codebuild/terminate_eb_env_dev.py b/codebuild/terminate_eb_env_dev.py