[doc][src] update conda to anaconda3/2023.03/default

This should work on both el7 and el9 hosts identically. RT513441
carlos-encs · Feb 29, 2024 · 8301ce2 · 8301ce2
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commit 8301ce2
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Showing 5 changed files with 14 additions and 7 deletions.
diff --git a/doc/speed-manual.tex b/doc/speed-manual.tex
@@ -544,6 +544,7 @@ \subsubsection{Anaconda}
 \texttt{a\_user}, execute the following at the command line:
 
 \begin{verbatim}
+module load anaconda3/2023.03/default
 conda create --prefix /speed-scratch/a_user/myconda
 \end{verbatim}
 
@@ -561,7 +562,7 @@ \subsubsection{Anaconda}
 \begin{verbatim}
 # conda environments:
 #
-base                  *  /encs/pkg/anaconda3-2019.07/root
+base                  *  /encs/pkg/anaconda3-2023.03/root
                          /speed-scratch/a_user/myconda
 \end{verbatim}      
 

diff --git a/src/README.md b/src/README.md
@@ -129,7 +129,7 @@ To view the Anaconda modules available, run
 Load the desired version of anaconda using the module load command.
 
 For example:
-`module load anaconda3`
+`module load anaconda3/2023.03/default`
 
 <!-- TOC --><a name="initialize-shell"></a>
 #### Initialize Shell
@@ -158,7 +158,7 @@ To view your conda environments, type
 ```
 # conda environments:
 #
-base                  *  /encs/pkg/anaconda3-2019.07/root
+base                  *  /encs/pkg/anaconda3-2023.03/root
                          /speed-scratch/<encs_username>/myconda
 ```                 
 
@@ -250,7 +250,7 @@ git clone --depth=1 https://github.com/NAG-DevOps/openiss-yolov3.git
 ```
 2. Starting by loading anaconda module 
 ```
-module load anaconda/default
+module load anaconda3/2023.03/default
 ```
 3. Switch to the project directoy. Create anaconda virtual environment, and configure development librires. The name of the environment can by any name here as an example named YOLO. Activate the conda environment YOLOInteractive.
 ```

diff --git a/src/openiss-reid-speed.sh b/src/openiss-reid-speed.sh
@@ -20,7 +20,7 @@
 #SBATCH --gpus=1
 
 # Execute the script
-module load anaconda/default
+module load anaconda3/2023.03/default
 conda env create -f environment.yml -p /speed-scratch/$USER/reid-venv
 conda activate /speed-scratch/$USER/reid-venv
 srun python reid.py

diff --git a/src/openiss-yolo-cpu.sh b/src/openiss-yolo-cpu.sh
@@ -23,10 +23,12 @@
 # Specify the output file name
 #SBATCH -o openiss-yolo-batch-cpu.log
 
+module load anaconda3/2023.03/default
+
 conda activate /speed-scratch/$USER/YOLO
 
 # Image example 
-#python yolo_video.py --model model_data/yolo.h5 --classes model_data/coco_classes.txt --image  --gpu_num 2
+#srun python yolo_video.py --model model_data/yolo.h5 --classes model_data/coco_classes.txt --image  --gpu_num 2
 
 # Video example 
 srun python yolo_video.py --input video/v1.avi --output video/001.avi #--gpu_num 2

diff --git a/src/openiss-yolo-gpu.sh b/src/openiss-yolo-gpu.sh
@@ -23,12 +23,16 @@
 # Specify the output file name
 #SBATCH -o openiss-yolo-batch-gpu.log
 
+module load anaconda3/2023.03/default
+
 conda activate /speed-scratch/$USER/YOLO
 
 # Image example 
-#python yolo_video.py --model model_data/yolo.h5 --classes model_data/coco_classes.txt --image  --gpu_num 2
+#srun python yolo_video.py --model model_data/yolo.h5 --classes model_data/coco_classes.txt --image  --gpu_num 2
 
 # Video example 
 srun python yolo_video.py --input video/v1.avi --output video/002.avi --gpu_num 2
 
 conda deactivate
+
+# EOF